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* Black bear links real objects to computer images

American black bears may be able to recognize things they know in real life, such as pieces of food or humans, when looking at a photograph of the same thing. This is one of the findings of a study led by Zoe Johnson-Ulrich and Jennifer Vonk of Oakland University in the US, which involved a black bear called Migwan and a computer screen. The findings are published in Springer’s journal Animal Cognition.

The study forms part of a broader research project into the welfare of bears in captivity. It aims to find out how the animals themselves rate the environment in which they are held, and the facilities, food and features provided to them. The goal is to assess this by presenting bears with photographs of objects. To do so, the research team first had to assess whether bears are in fact able to recognize 2-D images of objects and people familiar to them when these are presented to them on a touch screen.

With this in mind, the researchers tested the responses of an American black bear named Migwan. The bear was born in the wild, but was rescued at a very young age and rehabilitated due to injuries. She had previously received several months of training on an unrelated task using photographs of food items from her normal diet. In this study, Migwan was first presented with two sets of objects new to her. Her ability to recognize these later, when presented with photographs including the items she had learned, was then assessed. In a reverse task, she was also trained on the photographs of two different sets of objects and tested on the transfer to real objects.

It was found that Migwan was able to recognize, on a photograph, the visual features of objects or natural stimuli she already knew. It is an ability that bears share with hens, rhesus monkeys, pigeons, tortoises and horses.

“Bears can transfer learning with real objects to photographs of those objects presented on computer screens,” says Johnson-Ulrich.

This means that photographs of items (food, objects, people or other bears) that are familiar to bears can be used to further test their discrimination ability. Johnson-Ulrich therefore believes that the findings have important implications for the use of photographs in computerized studies involving bears, and in ultimately ensuring the welfare of captive bears.

“Because a lot of research with photographic stimuli uses familiar images, for example food or conspecifics, this is useful in suggesting that bears’ responses to these photographs may reflect behaviors towards real items,” Vonk notes.

Johnson-Ulrich and Vonk however caution that the ability of bears to recognize features of real objects within 2D-images does not necessarily mean they understand the representational nature of photographs. It is also still uncertain how well bears are able to recognize tangible objects which they first saw on a photograph before being introduced to the real thing. Further research using other bears is therefore needed to verify if the animals can transfer information from pictures to objects, too.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160714110745.htm  Original web page at Science Daily

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What free will looks like in the brain

Johns Hopkins University researchers are the first to glimpse the human brain making a purely voluntary decision to act.

Unlike most brain studies where scientists watch as people respond to cues or commands, Johns Hopkins researchers found a way to observe people’s brain activity as they made choices entirely on their own. The findings, which pinpoint the parts of the brain involved in decision-making and action, are now online, and due to appear in a special October issue of the journal Attention, Perception, & Psychophysics.

“How do we peek into people’s brains and find out how we make choices entirely on our own?” asked Susan Courtney, a professor of psychological and brain sciences. “What parts of the brain are involved in free choice?”

The team devised a novel experiment to track a person’s focus of attention without using intrusive cues or commands. Participants, positioned in MRI scanners, were left alone to watch a split screen as rapid streams of colorful numbers and letters scrolled past on each side. They were asked simply to pay attention to one side for a while, then to the other side — when to switch sides was entirely up to them. Over an hour, the participants switched their attention from one side to the other dozens of times.

Researchers monitored the participants’ brains as they watched the media stream, both before and after they switched their focus.

For the first time, researchers were able to see both what happens in a human brain the moment a free choice is made, and what happens during the lead-up to that decision — how the brain behaves during the deliberation over whether to act.

The actual switching of attention from one side to the other was closely linked to activity in the parietal lobe, near the back of the brain. The activity leading up to the choice — that is, the period of deliberation — occurred in the frontal cortex, in areas involved in reasoning and movement, and in the basal ganglia, regions deep within the brain that are responsible for a variety of motor control functions including the ability to start an action. The frontal-lobe activity began earlier than it would have if participants had been told to shift attention, clearly demonstrating that the brain was preparing a purely voluntary action rather than merely following an order.

Together, the two brain regions make up the core components underlying the will to act, the authors concluded.

“What’s truly remarkable about this project,” said Leon Gmeindl, a research scientist at Johns Hopkins and lead author of the study, “is that by devising a way to detect brain events that are otherwise invisible — that is, a kind of high-tech ‘mind reading’ — we uncovered important information about what may be the neural underpinnings of volition, or free will.”

Now that scientists have a way to track choices made from free will, they can use the technique to determine what’s happening in the brain as people wrestle with other, more complex decisions. For instance, researchers could observe the brain as someone tried to decide between snacking on a doughnut or on an apple — watching as someone weighed short-term rewards against long-term rewards, and perhaps being able to pinpoint the tipping point between the two.

“We now have the ability to learn more about how we make decisions in the real world,” Courtney said.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160713114937.htm Original web page at Science Daily

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New signaling pathway for programmed cell death identified in leukemia cells

When adults develop blood cancer, they are frequently diagnosed with what is referred to as acute myeloid leukemia. The disease is triggered by pathological alterations of bone marrow cells, in which, in addition, an important mechanism is out of action: these cells do not die when they are damaged. Researchers from the Technical University of Munich (TUM) have now discovered a molecular signaling pathway for self-destruction that is suppressed in leukemia cells.

Leukemia involves pathological alterations in the body’s hematopoietic system. In acute myeloid leukemia, it is specifically the bone marrow (Greek: myelos) that is affected. In a healthy body, different blood cells, which perform different functions in the blood, are formed from stem cells and what is referred to as progenitor cells in the bone marrow. A genetic mutation can lead to alterations in stem cells and progenitor cells and turn them into leukemia-initiating cells, which are referred to as LICs for short. Like healthy progenitor cells, LICs multiply in the bone marrow. The genetic mutation, however, causes LICs to remain without function and prevents them from developing into mature blood cells, which ultimately leads to the repression of healthy hematopoiesis in the bone marrow and the onset of leukemia symptoms.

The most frequent genetic alterations in myeloid leukemia include mutations in the FLT3 gene. A team led by Dr. Philipp Jost from the Department of Hematology/Oncology at Klinikum rechts der Isar at the Technical University of Munich has now discovered that the effects of this gene on pathologically altered cells in a way provide certain indications for the treatment of the disease. The mutation causes a permanent activation of the FLT3 gene. As demonstrated by the scientists, this triggers inflammation-like stimuli in the cell, subjecting it to permanent stress.

Under normal circumstances, such permanent inflammatory stimuli would trigger a program known as programmed cell death to replace damaged cells. This is a kind of self-destruction mechanism used by a cell to initiate its own destruction in a coordinated fashion and allow it to be replaced by a healthy one. “By contrast, LICs manage to grow and proliferate despite the inflammation and damage,” states Philipp Jost. “In our study, we have taken a closer look at the molecular causes of this resistance.”

To gain a better understanding of the research project described by the TUM scientists in the medical journal “Cancer Cell,” it is important to understand that cells have different ways of self-destructing. So far, the primary research focus in trying to ascertain why cancer cells survive longer than they should has been placed on a process called apoptosis. However, the fact that inflammatory processes occur in LICs pointed Philipp Jost and his colleagues in a different direction. Another way to initiate cell death is through what is referred to as necroptosis. Whereas, in apoptosis, a cell shrinks in a coordinated fashion, in necroptosis, a sudden destruction occurs, which releases the contents of the dying cell along with numerous messenger substances. This induces a strong inflammatory stimulus in the vicinity of the cell.

Necroptosis is triggered by the activation of a protein called RIPK3, which subsequently initiates processes within the cell that lead to its death. The scientists used cell cultures to discover that leukemia takes a particularly severe course when RIPK3 is blocked inside LICs. This led to the cancer cells surviving particularly long, accompanied by their strong division and conversion to functionless blood cells (blasts). “We conclude from our findings that particularly aggressive cancer cells have the capacity to block RIPK3,” states Ulrike Höckendorf, lead author of the study. “Exactly how they accomplish this, however, remains to be investigated.”

Inducing cell death in a LIC by means of necroptosis has repercussions which also affect neighboring leukemia cells. The inflammatory stimuli triggered by the substances released during necroptosis are significantly stronger than the processes caused by the mutation in the FLT3 gene in a LIC. This inflammation has positive effects on the area surrounding the cell: induced by the messenger substances, neighboring leukemia cells begin to mature similar to healthy cells, leading to a less aggressive progression of leukemia.

With cell death blocked — apoptosis, too, is “neutralized” in many cancer cells — individual LICs manage to survive and proliferate even after chemotherapy or radiotherapy. “The new findings on the impact of the RIPK3 signaling pathway and the messenger substances released could open up new options for the treatment of leukemia,” states Philipp Jost. “If it were possible to artificially reproduce the effect of RIPK3 using medication, one could launch a targeted attack on leukemia cells.”

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/07/160714110910.htm Original web page at Science Daily

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* Newborn ducklings can acquire notions of ‘same’ and ‘different’

Scientists from the University of Oxford have shown that newly hatched ducklings can readily acquire the concepts of ‘same’ and ‘different’ — an ability previously known only in highly intelligent animals such as apes, crows and parrots.

Ducklings and other young animals normally learn to identify and follow their mother through a type of learning called imprinting, which can occur in as little as 15 minutes after hatching. Imprinting is a powerful form of learning that can allow ducklings to follow any moving object, provided they see it within the species’ typical ‘sensitive period’ for imprinting.

In this new study, published in the journal Science, ducklings were initially presented with a pair of objects either the same as or different from each other — in shape or in colour — which moved in a circular path.

The ducklings therefore ‘imprinted’ on these pairs of moving objects before being tested for their preferences between different sets of objects. In these subsequent choice tests, each duckling was allowed to follow either of two pairs of objects composed of shapes or colours to which the duckling had not previously been exposed.

For example, if an individual duckling had originally been exposed to a pair of spherical objects, in the choice test it may have had to choose between following a pair of pyramids (same) or a pair made up of one cube and one cuboid (different).

If the birds had learned the relationship between members of the original moving pair, then they should have followed the pairs of novel objects showing that same relationship (either ‘same’ or ‘different’), even if they had never seen the test objects.

In the example above, ducklings that had been imprinted on two spheres should have followed the set of two pyramids, because they were the same as each other. This is exactly what the ducklings did.

About three-quarters of the ducklings preferred to follow the stimulus pair exhibiting the relationship they had learned in imprinting, and their accuracy was as good whether they had to learn the concept of equal or different, or whether they were tested with shapes or colours.

Professor Alex Kacelnik of Oxford University’s Department of Zoology, who has worked extensively on learning and decision-making in animals, said: ‘To our knowledge this is the first demonstration of a non-human organism learning to discriminate between abstract relational concepts without any reinforcement training. The other animals that have demonstrated this ability have all done so by being repeatedly rewarded for correct performance, while our ducklings did it spontaneously, thanks to their predisposition to imprint when very young.

‘And because imprinting happens so quickly, the ducklings learned to discriminate relational concepts much faster than other species, and with a similar level of precision.’

Antone Martinho, a doctoral student in Oxford’s Department of Zoology and the study’s first author, said: ‘While it seems surprising at first that these one-day-old ducklings can learn something that normally only very intelligent species can do, it also makes biological sense. When a duckling is young, it needs to be able to stay near its mother for protection, and an error in identifying her could be fatal.

‘Ducks walk, swim and fly, and are constantly changing their exact shape and appearance as they extend their wings or become partially submerged, or even change angle with respect to the viewer. If the ducklings just had a visual “snapshot” of their mother, they would lose her. They need to be able to flexibly and reliably identify her, and a library of concepts and characteristics describing her is a much more efficient way to do so, compared with a visual memory of every possible configuration of the mother and her environment.

‘Still, this is an unexpected feat for a duckling, and a further reminder that “bird-brain” is quite an unfair slur.’

The discovery of relational concept learning in a new species and in a newly hatched baby bird suggests that this ability may not be as rare or as difficult as previously thought.

Professor Kacelnik added: ‘It may mean that relational concepts are adaptively useful or even necessary to a wider variety of animal. Most animals will, like the ducklings, need identification mechanisms that are robust to natural variation. A challenge we face now is to identify the processes by which the animals’ brains achieve it.’

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160714151856.htm  Original web page at Science Daily

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Overeating in obese mice linked to altered brain responses to food cues

Obese mice are much more likely than lean mice to overeat in the presence of environmental cues, a behavior that could be related to changes in the brain, finds a new study by a Michigan State University neuroscientist. The study is to be presented this week at the Society for the Study of Ingestive Behavior, the foremost society for research into all aspects of eating and drinking behavior.

The findings offer clues in Alexander Johnson’s quest to unpack the interconnected mechanisms of overeating and obesity. Obesity is an epidemic domestically — more than a third of Americans are considered to be obese — and a growing health problem in other parts of the world.

“In today’s society we are bombarded with signals to eat, from fast-food commercials to the smell of barbecue and burgers, and this likely drives overeating behaviors,” said Johnson, Assistant Professor of Psychology at Michigan State University. “Our study suggests both a psychological and neurobiological account for why obese individuals may be particularly vulnerable to these signals.”

The study involved two groups of mice — one group that was fed a high-calorie diet until they became obese and a second group that was fed a regular lab chow diet so they stayed lean. Johnson then trained the mice with different auditory cues. Whenever they heard one cue, such as a tone, the mice received sugar reward; with a second cue, such as a white noise, they received no reward.

The mice were then given access to their assigned maintenance diet for three days so they were satiated (i.e., not hungry) for the final test phase of the study. In that test, the sugar solution was available to the mice at all times, to see what would trigger them to start eating. When no cue was given, and when the white-noise cue was given (which previously offered no reward), the lean mice and obese mice ate roughly the same amount. When the rewarding tone cue was given, however, the obese mice ate significantly more of the sugar solution compared to the lean mice.

“From a psychological perspective, this tells us that the obese mice are more vulnerable to the effects of environmental triggers on evoking overeating behavior,” Johnson said. “Looking at it through a human lens, this suggests that obese individuals may be more sensitive to overeating food in the presence of say, the McDonald’s Golden Arches.”

Johnson also examined the mice’s lateral hypothalamus, which is known as a key brain area in appetite and feeding behavior. Using a procedure called immunofluorescence to label neurons in this area of the brain, he found that neurons releasing a certain hormone- Melanin-Concentrating Hormone, or MCH — were more abundant in obese mice. But importantly, these MCH-releasing neurons were more active when the obese mice encountered the environmental reminders of sugar.

“In other words, if you become obese this leads to increases in MCH expression, which may make you more sensitive to this form of overeating,” Johnson said.

The novel findings, he added, start to paint a picture of the relationship between brain-behavior mechanisms that may underlie learned overeating in obese individuals.

“This could be one of perhaps many reasons why obese people may have the urge to eat more when presented with food cues.”

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/07/160712092351.htm  Original web page at Science Daily

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Thinking ‘I can do better’ really can improve performance, study finds

Telling yourself I can do better, can really make you do better at a given task, a study published in Frontiers in Psychology has found.

Over 44,000 people took part in an experiment to discover what motivational techniques really worked. In conjunction with BBC Lab UK, Professor Andrew Lane and his colleagues tested which physiological skills would help people improve their scores in an online game.

This complex study examined if one motivational method would be more effective for any specific aspect of a task. The methods tested were self-talk, imagery, and if-then planning. Each of these psychological skills was applied to one of four parts of a competitive task: process, outcome, arousal-control, and instruction.

People using self-talk, for example telling yourself “I can do better next time” — performed better than the control group in every portion of the task.

The greatest improvements were seen in self-talk-outcome (telling yourself, “I can beat my best score”), self-talk-process (telling yourself, “I can react quicker this time”), imagery-outcome (imagining yourself playing the game and beating your best score), and imagery-process (imagining yourself playing and reacting quicker than last time).

They also found a short motivational video could improve performance. Participants watched a short video before playing the online game. The coach for these videos was, none other than, four-time Olympic gold medalist Michael Johnson, an athlete known for advocating mental preparedness in addition to physical training.

If-then planning was found to be one of the least successful of this study, despite being an effective tool in weight management and other real life challenges.

Professor Lane said: “Working on, ‘Can You Compete?’ was inspirational and educational; since we have been developing online interventions to help people manage their emotions and doing this across a range of specific contexts from delivering a speech to fighting in a boxing ring, from taking an exam to going into dangerous places.”

Over 44,000 people participated in the study, an astounding number considering that the majority of psychological experiments have fewer than 300 participants. The participants were divided into 12 experimental groups and one control group, also impressive, because most studies have two or three experimental groups.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/06/160630102038.htm  Original web page at Science Daily

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* Happy cows make more nutritious milk

Daily infusions with a chemical commonly associated with feelings of happiness were shown to increase calcium levels in the blood of Holstein cows and the milk of Jersey cows that had just given birth. The results, published in the Journal of Endocrinology, could lead to a better understanding of how to improve the health of dairy cows, and keep the milk flowing.

Demand is high for milk rich in calcium: there is more calcium in the human body than any other mineral, and in the West dairy products such as milk, cheese and yoghurt are primary sources of calcium. But this demand can take its toll on milk-producing cows: roughly 5-10% of the North American dairy cow population suffers from hypocalcaemia — in which calcium levels are low. The risk of this disease is particularly high immediately before and after cows give birth.

Hypocalcaemia is considered a major health event in the life of a cow. It is associated with immunological and digestive problems, decreased pregnancy rates and longer intervals between pregnancies. These all pose a problem for dairy farmers, whose profitability depends upon regular pregnancies and a high-yield of calcium-rich milk.

Whilst there has been research into the treatment of hypocalcaemia, little research has focused on prevention. In rodents it has been shown that serotonin (a naturally-occurring chemical commonly associated with feelings of happiness) plays a role in maintaining calcium levels; based on this, a team from the University of Wisconsin-Madison, led by Dr Laura Hernandez, investigated the potential for serotonin to increase calcium levels in both the milk and blood of dairy cows. The team infused a chemical that converts to serotonin into 24 dairy cows, in the run up to giving birth. Half the cows were Jersey and half were Holstein — two of the most common breeds. Calcium levels in both the milk and circulating blood were measured throughout the experiment.

Whilst serotonin improved the overall calcium status in both breeds, this was brought about in opposite ways. Treated Holstein cows had higher levels of calcium in their blood, but lower calcium in their milk (compared to controls). The reverse was true in treated Jersey cows and the higher milk calcium levels were particularly obvious in Jerseys at day 30 of lactation — suggesting a role for serotonin in maintaining levels throughout lactation.

“By studying two breeds we were able to see that regulation of calcium levels is different between the two,” says Laura Hernandez. “Serotonin raised blood calcium in the Holsteins, and milk calcium in the Jerseys. We should also note that serotonin treatment had no effect on milk yield, feed intake or on levels of hormones required for lactation.”

The next steps are to investigate the molecular mechanism by which serotonin regulates calcium levels, and how this varies between breeds.

“We would also like to work on the possibility of using serotonin as a preventative measure for hypocalcaemia in dairy cows,” continues Laura Hernandez, “That would allow dairy farmers to maintain the profitability of their businesses, whilst making sure their cows stay healthy and produce nutritious milk.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160715114108.htm. Original web page at Science Daily

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Red meat consumption linked with increased risk of developing kidney failure

A new study indicates that red meat intake may increase the risk of kidney failure in the general population, and substituting red meat with alternative sources of protein from time to time may significantly reduce this risk. The findings appear in an upcoming issue of the Journal of the American Society of Nephrology (JASN).

Increasing numbers of individuals are developing chronic kidney disease (CKD), and many progress to end-stage renal disease (ESRD), which requires dialysis or a kidney transplant. Current guidelines recommend restricting dietary protein intake to help manage CKD and slow progression to ESRD; however, there is limited evidence that overall dietary protein restriction or limiting specific food sources of protein intake may slow kidney function decline in the general population.

To examine the relationship between dietary intake of major sources of protein and kidney function, a team led by Woon-Puay Koh, MBBS (Hons), PhD (Duke-NUS Medical School and Saw Swee Hock School of Public Health in National University of Singapore) analyzed data from the Singapore Chinese Health Study, a prospective study of 63,257 Chinese adults in Singapore. This is a population where 97% of red meat intake consisted of pork. Other food sources of protein included poultry, fish/shellfish, eggs, dairy products, soy, and legumes.

After an average follow-up of 15.5 years, the researchers found that red meat intake was strongly associated with an increased risk of ESRD in a dose-dependent manner. People consuming the highest amounts (top 25%) of red meat had a 40% increased risk of developing ESRD compared with people consuming the lowest amounts (lowest 25%) No association was found with intakes of poultry, fish, eggs, or dairy products, while soy and legumes appeared to be slightly protective. Substituting one serving of red meat with other sources of protein reduced the risk of ESRD by up to 62%.

“We embarked on our study to see what advice should be given to CKD patients or to the general population worried about their kidney health regarding types or sources of protein intake,” said Dr. Koh. “Our findings suggest that these individuals can still maintain protein intake but consider switching to plant-based sources; however, if they still choose to eat meat, fish/shellfish and poultry are better alternatives to red meat.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160714193627.htm  Original web page at Science Daily

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Viruses revealed to be a major driver of human evolution

The constant battle between pathogens and their hosts has long been recognized as a key driver of evolution, but until now scientists have not had the tools to look at these patterns globally across species and genomes. In a new study, researchers apply big-data analysis to reveal the full extent of viruses’ impact on the evolution of humans and other mammals.

Their findings suggest an astonishing 30 percent of all protein adaptations since humans’ divergence with chimpanzees have been driven by viruses.

“When you have a pandemic or an epidemic at some point in evolution, the population that is targeted by the virus either adapts, or goes extinct. We knew that, but what really surprised us is the strength and clarity of the pattern we found,” said David Enard, Ph.D., a postdoctoral fellow at Stanford University and the study’s first author. “This is the first time that viruses have been shown to have such a strong impact on adaptation.”

The study was recently published in the journal eLife and will be presented at The Allied Genetics Conference, a meeting hosted by the Genetics Society of America, on July 14.

Proteins perform a vast array of functions that keep our cells ticking. By revealing how small tweaks in protein shape and composition have helped humans and other mammals respond to viruses, the study could help researchers find new therapeutic leads against today’s viral threats.

“We’re learning which parts of the cell have been used to fight viruses in the past, presumably without detrimental effects on the organism,” said the study’s senior author, Dmitri Petrov, Ph.D., Michelle and Kevin Douglas Professor of Biology and Associate Chair of the Biology Department at Stanford. “That should give us an insight on the pressure points and help us find proteins to investigate for new therapies.”

Previous research on the interactions between viruses and proteins has focused almost exclusively on individual proteins that are directly involved in the immune response — the most logical place you would expect to find adaptations driven by viruses. This is the first study to take a global look at all types of proteins.

“The big advancement here is that it’s not only very specialized immune proteins that adapt against viruses,” said Enard. “Pretty much any type of protein that comes into contact with viruses can participate in the adaptation against viruses. It turns out that there is at least as much adaptation outside of the immune response as within it.”

The team’s first step was to identify all the proteins that are known to physically interact with viruses. After painstakingly reviewing tens of thousands of scientific abstracts, Enard culled the list to about 1,300 proteins of interest. His next step was to build big-data algorithms to scour genomic databases and compare the evolution of virus-interacting proteins to that of other proteins.

The results revealed that adaptations have occurred three times as frequently in virus-interacting proteins compared with other proteins.

“We’re all interested in how it is that we and other organisms have evolved, and in the pressures that made us what we are,” said Petrov. “The discovery that this constant battle with viruses has shaped us in every aspect — not just the few proteins that fight infections, but everything — is profound. All organisms have been living with viruses for billions of years; this work shows that those interactions have affected every part of the cell.”

Viruses hijack nearly every function of a host organism’s cells in order to replicate and spread, so it makes sense that they would drive the evolution of the cellular machinery to a greater extent than other evolutionary pressures such as predation or environmental conditions. The study sheds light on some longstanding biological mysteries, such as why closely-related species have evolved different machinery to perform identical cellular functions, like DNA replication or the production of membranes. Researchers previously did not know what evolutionary force could have caused such changes. “This paper is the first with data that is large enough and clean enough to explain a lot of these puzzles in one fell swoop,” said Petrov.

The team is now using the findings to dig deeper into past viral epidemics, hoping for insights to help fight disease today. For example, HIV-like viruses have swept through the populations of our ancestors as well as other animal species at multiple points throughout evolutionary history. Looking at the effects of such viruses on specific populations could yield a new understanding of our constant war with viruses — and how we might win the next big battle.

were divided into 12 experimental groups and one control group, also impressive, because most studies have two or three experimental groups.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/06/160630102038.htm  Original web page at Science Daily

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Key to regulating cell’s powerhouse discovered

Aging, neurodegenerative disorders and metabolic disease are all linked to mitochondria, structures within our cells that generate chemical energy and maintain their own DNA. In a fundamental discovery with far-reaching implications, scientists at the University of California, Davis, now show how cells control DNA synthesis in mitochondria and couple it to mitochondrial division.

The work is published July 15 in the journal Science.

“This has very profound implications for human disease,” said Jodi Nunnari, professor and chair of molecular and cellular biology at UC Davis and senior author on the paper.

Mitochondria retain their own DNA from the very distant past, when they were a type of bacteria that moved into other cells and never left. All eukaryotic cells — in plants, animals and fungi — contain mitochondria, which allow oxygen-breathing organisms to obtain energy from respiration.

In human cells, mitochondria are elongated, snaking tubes, with hundreds to thousands of copies of their single chromosome dotted around, packaged in a structure called the nucleoid. While the DNA in the cell’s nucleus comes from both parents, your mitochondrial DNA is inherited only from your mother.

While division of DNA in the cell’s nucleus is tightly controlled, synthesis and division of mitochondrial DNA is “a lot more relaxed,” Nunnari said.

How does the cell decide where all the copies of the mitochondrial DNA should go? And how is their division organized, if it is? Contact points are crucial.

Postdoctoral researcher Samantha Lewis, with undergraduate student Lauren Uchiyama, used microscopy with fluorescent dyes to tag mitochondria, their chromosomes, and the endoplasmic reticulum, a network of tubes that spreads throughout the cell.

They found that dividing mitochondrial chromosomes were located at points where the endoplasmic reticulum touches the outside of a mitochondrion. These also became the points where mitochondria divided into two offspring, a process that requires a sort of lasso of protein around the organelle that squeezes it until it splits.

“The endoplasmic reticulum comes into contact with the mitochondrion, and where they contact is where they divide,” Nunnari said.

The contact between the two organelles “licenses” the mitochondrial DNA to copy and divide, Nunnari said. This DNA division is in turn spatially coupled to division of the mitochondrion itself, and to distribution of the daughter DNA around the cell.

“There are hundreds of contact points around the cell that determine where division takes place and how mitochondria are distributed, but division preferentially occurs at the subset of contacts where mitochondrial DNA is being copied” Nunnari said. “It shows that there is a higher order to this, it is not simply random.”

The discovery has broad implications for understanding cell functions, aging and a broad range of diseases. Nunnari noted that it stemmed entirely from fundamental research.

“We didn’t come to this by studying any specific disease, it’s discovery-based research,” she said. “But this will greatly impact human health.”

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/07/160715113551.htm Original web page at Science Daily

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*Battling toxoplasmosis: International team describes step-by-step progress

In the July 14 edition of Scientific Reports (Nature), 39 researchers from 14 leading institutions in the United States, United Kingdom and France suggest novel approaches that could hasten the development of better medications for people suffering from toxoplasmosis. This chronic, currently incurable infection, caused by the parasite Toxoplasma gondii, infects the brain and eye of as many as 2 billion people worldwide.

Their findings provide conceptual and practical roadmaps for improving the efficacy and reducing toxicity of available medicines. They also offer insights into the biology of T. gondii, suggest critical molecular targets for new medicines, and offer renewed hope for the speedy development of much-needed curative medicines for those with toxoplasmosis–and potentially malaria.

The researchers describe three significant steps forward: They characterized a new experimental model, a Brazilian strain of T. gondii, called EGS, which behaves in tissue culture much like the dormant cystic parasites that live in human brain cells. This is “an immensely useful and important advance for medicine development,” said the study’s corresponding author Rima McLeod, professor of ophthalmology and visual sciences and of pediatrics at the University of Chicago. “It allows us to define its genotype and phenotype in depth and to identify what it does to its human host’s blood and primary brain stem cells. Remarkably, this encysted parasite turns on host cell pathways in ways that can alter ribosomal function and cause mis-splicing of transcripts as well as other flaws associated with Alzheimer’s and Parkinson’s disease.”

The researchers found targets critical for the parasite’s various life stages. Especially appealing was the parasite’s mitochondrial protein, cytochrome b. The team was able to develop compounds more soluble than existing cytochrome b inhibiting quinolones. These can limit parasite survival, and have physiochemical properties commensurate with crossing the blood-brain barrier to treat central nervous system infections. This work emphasizes that the cytochrome bc 1 complex is a critical target. Co-crystallography of the enzyme with the inhibitor provides information to optimize inhibitory compounds.

They show that greater understanding of T. gondii could have significant implications for anti-malarial research. Compounds they developed were highly effective against Plasmodium falciparum, the parasite that causes malaria, including all tested drug-resistant strains. Malaria, McLeod emphasized, “kills a child every eleven seconds.”

The team’s findings matter because T. gondii is the most frequent cause of infection leading to destruction of the back of the eye for persons in most countries in the world. It is most damaging for infants and children who acquire infection from their mothers during gestation, but it can also cause life-threatening infections in those with compromised immune systems, such as those with cancer, autoimmune disease or AIDS. Highly virulent strains of Toxoplasma are also now known to cause lethal disease, especially in South America.

A large data analysis by researchers at the University of Chicago, published June 26, 2016, in Clinical Infectious Diseases, found that the estimated annual incidence of toxoplasmosis over the last ten years in the US was 6,137 people, based on diagnostic codes for the disease. An editorial in that journal notes that these data “are the strongest to date to indicate that toxoplasmosis represents a significant disease burden in the United States.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160715140753.htm  Original web page at Science Daily

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Four steps for validating stem cells

Scientists at EPFL and in the US have developed a robust method for characterizing human embryonic stem cells and their potential for medical applications.

The key to utilizing stem cells for regenerative medicine and tissue engineering lies in a property of theirs called pluripotency. This refers to the cells’ ability to differentiate into different types of cells. This means that we need to be able to reliably obtain, culture and maintain fully pluripotent stem cells. It has been difficult to generate human embryonic stem cells at the earliest stage of pluripotency, in what is named “ground” or “naïve” state, whereas this is readily done with mouse cells. The labs of Rudolf Jaenisch at MIT, Joe Ecker at the Salk Institute, and Didier Trono at EPFL have now developed a four-step process for determining accurate signatures of human embryonic stem cells and relating them to precise developmental stages. The work, a first for human embryonic stem cells, is published in Cell Stem Cell.

The first criterion involves a rigorous assay to see how much the naïve stem cells contribute to a mouse-human embryo. If the resulting organism (a so-called “chimera”) contains any human DNA, it signals successful engraftment of the stem cells.

The second criterion looks at the expression profile of 4.5 million RNA biomarkers called “transposable elements,” which are genetic units that can move around the genome — in fact, they make up half of the human genome. Because they can cause dangerous mutations by inserting themselves inside genes, transposable elements are actually suppressed in the early developmental stages of the embryo. However, transposable elements also regulate gene expression, and are essential in maintaining the organism’s homeostasis. The researchers demonstrated that profiling which transposable elements are active in the stem cells is an extremely sensitive and highly reproducible indicator of their pluripotency stage.

The third criterion focuses on DNA methylation state of the cells, which is lower in the naïve compared to the primed state. Finally, the fourth criterion is the epigenetic state of the X chromosome in female naïve cells, which resembles that found in the human pre-implantation embryo.

The study provides a roadmap for broadly evaluating stage, state and quality of human pluripotent cells, and can overcome current limitations with using such cells in research and clinical applications. Based on this work, the researchers have developed a startup project named Cellphmed. The company’s mission is to streamline the experimental work of the second criterion, which involves the transcriptional profiling of transposable elements to generate human cell markers for broad research and clinical applications.

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/07/160714135026.htm Original web page at Science Daily

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HPV vaccine can protect women across a broad age range

A research paper published in The Lancet Infectious Diseases reported that the human papillomavirus (HPV) vaccine is safe and efficacious across a wide age range of women. The international study found that it protects against HPV infection in women older than 26 years. Vaccination programs worldwide currently target routine vaccination of women 26 years and younger.

The study recruited women in 12 countries across four continents. Cosette Wheeler, PhD, at The University of New Mexico Comprehensive Cancer Center, was the lead author of the report.

The human papillomaviruses cause cancer of the cervix, anus, and middle throat. Five types of HPV account for about 85 percent of all invasive cervical cancer cases. HPV vaccines are expected to prevent most of these cancer cases.

Many countries routinely vaccinate girls and boys 25 years and younger, although vaccination rates in the United States remain low. In the US, only about 40 percent of girls and 21 percent of boys receive the three-dose vaccination series. The earlier the vaccine is given, the more efficacious it can be.

This study focused on the benefit of vaccinating women 26 years and older. Infection with HPV can take place at any time throughout adulthood and women in this age group may have already been exposed to HPV. The study showed that women in this age group were still protected from HPV infections.

The scientists followed each woman for four to seven years. They found that the vaccine protected the women against HPV infections during the follow-up period and that the women were protected from many types of HPV across a broad age range. These study results are essential to new approaches in cancer prevention, particularly those that are investigating combined approaches of cervical screening and vaccination in adult women.

Cosette Wheeler, PhD is a UNM Regents Professor in the Departments of Pathology and Obstetrics and Gynecology at the University of New Mexico Health Sciences Center. She holds the Victor and Ruby Hansen Surface Endowed Chair in Translational Medicine and Public Health. Her New Mexico research group has contributed for over 20 years to understanding the molecular epidemiology of human papillomaviruses (HPV) in cervical precancer and cancer among Native American, Hispanic and non-Hispanic women of the southwest and on a global basis. She has overseen a number of large-scale multidisciplinary population-based projects that have ultimately enabled advances in primary (HPV vaccines) and secondary cervical cancer prevention (Pap and HPV tests).

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160713115215.htm  Original web page at Science Daily

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Study shows a new role for B-complex vitamins in promoting stem cell proliferation

The study, published July 11 in Developmental Cell, shows for the first time that an adult stem cell population is controlled by an external factor arising from outside the animal–bacterial folate. In this case, that animal was a small roundworm model organism known as Caenorhabditis elegans. 

“Our study shows that germ stem cells in Caenorhabditis elegans are stimulated to divide by a specific folate that comes from their bacterial diet,” said the study’s co-senior author Edward Kipreos, a professor in UGA’s Franklin College of Arts and Sciences. “Folates are essential B-group vitamins. However, we show that the ability of a specific folate to stimulate germ cells is independent of its role as a vitamin, implying that it acts directly as a signaling molecule.”

Naturally occurring folates exist in many chemical forms; folates are found in food, as well as in metabolically active forms in the human body. Folic acid is the major synthetic form found in fortified foods and vitamin supplements.

“Since its discovery in 1945, folate has been the subject of many studies that resulted in more than 50,000 publications. The finding in this study is the first of its kind because it presents evidence that folate is involved in roles other than those that were known before,” said the study’s co-senior author Jacob Selhub, director of the Vitamin Metabolism Laboratory at Tufts University.

“Grains in the U.S. and a few other countries are currently supplemented with folates,” Kipreos said. “Folate supplementation has been an important contributor in reducing the number of neural tube birth defects. However, a vitamin-independent role of folates may provide a secondary pathway, the nature and biological impact of which for humans are yet to be determined.”

The study describes how a specific folate receptor, FOLR-1, in C. elegans is required for the stimulation of germ stem cell growth.

The research team observed a process in C. elegans in which the action of FOLR-1 is required to promote germ cell tumors that may be similar to the way folate receptors promote the progression of certain cancers in humans. With a few exceptions, folate receptors are not essential for the transport of folates into cells for use as vitamins, but may act to stimulate cell division.

As a part of the published findings, the researchers created the first system that allows C. elegans germ cells to be cultured in vitro.

“This technique provides an important new tool for the study of this major genetic model organism,” Kipreos said.

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/07/160711150942.htm Original web page at Science Daily

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* Bright light accelerates ageing in mice

Eliane Lucassen works the night shift at Leiden University Medical Center in the Netherlands, beginning her day at 6 p.m. Yet her own research has shown that this schedule might cause her health problems. “It’s funny,” the medical resident says. “Here I am, spreading around that it’s actually unhealthy. But it needs to be done.”

Lucassen and Johanna Meijer, a neuroscientist at Leiden, report today in Current Biology that a constant barrage of bright light prematurely ages mice, playing havoc with their circadian clocks and causing a cascade of health problems.

Mice exposed to constant light experienced bone-density loss, skeletal-muscle weakness and inflammation; restoring their health was as simple as turning the lights off. The findings are preliminary, but they suggest that people living in cities flooded with artificial light may face similar health risks.

“We came to know that smoking was bad, or that sugar is bad, but light was never an issue,” says Meijer. “Light and darkness matter.”

Many previous studies have hinted at a connection between artificial light exposure and health problems in animals and people. Epidemiological analyses have found that shift workers have an increased risk of breast cancer, metabolic syndrome4 and osteoporosis. People exposed to bright light at night are more likely to have cardiovascular disease and often don’t get enough sleep.

Yet drawing a direct link between light exposure and poor health has been difficult. Meijer’s group explored this relationship in mice by implanting electrodes in the part of the animals’ brains that controls their body clocks, to measure the activity of neurons there. The scientists then housed the mice in brightly lit cages for 24 weeks.

The animals had bedding to make nests, could move freely and were able to close their eyes when they slept. But sleeping mice couldn’t avoid the light entirely, and still got about one-seventh of the light exposure that they did while awake. Overall, the animals were exposed to more light than they would get in a typical light–dark cycle.

In response, the mice’s neuronal activity patterns shifted, leaving cells in the brain’s pacemaker region pulsing irregularly. This loss of synchronization mirrors what happens in ageing brains.

The mice also adopted a 25.5-hour day, lost bone density and had weaker muscles, as measured by how strongly they could grip with their forelimbs. After the researchers restored darkness, the mice’s neurons returned to their normal rhythms and the animals reverted to a 24-hour day.

The analysis takes an innovative approach to studying circadian biology in mice, says Richard Stevens, an epidemiologist at the University of Connecticut School of Medicine in Farmington who studies the effect of light on cancer. But he says that the findings may not apply to people. The bright lights foisted on the mice were more dramatic than the light–dark cycles that people would experience in real life, even in extreme situations.

“The next experiment ought to be something like 12 hours of light, 6 hours of dim light and 6 hours of dark. That would be the kind of exposure that humans would have,” Stevens says.

And disruption of the biological clock alone might not cause the health effects reported in the study, says Steven Lockley, a neuroscientist at Harvard Medical School in Boston, Massachusetts. Poor sleep and light itself can each affect health, so an altered circadian clock may not be to blame.

But Meijer says the study should be a warning to people who work in intensive-care facilities or long-term care facilities, and to shift workers — such as her former student, Lucassen.

An atlas of artificial light pollution released in June showed that two-thirds of the world’s population is exposed to light at night. Also last month, the American Medical Association’s Council on Science and Public Health called for a reduction in bright artificial light, citing evidence that it may increase a person’s risk of developing cancer, diabetes and cardiovascular disease.

Meijer now plans to examine how light affects the immune system, and she wants to repeat her neuron-monitoring study with grass rats, which are active during the day (unlike standard lab mice). She remains fascinated by the circadian system.

“There is no other region of the brain we know so much about,” Meijer says. “It has been a beautiful model for neuroscience research. But only in the last five to seven years have we realized it is also essential for health.”

Nature doi:10.1038/nature.2016.20263

http://www.nature.com/news/index.html  Nature

http://www.nature.com/news/bright-light-accelerates-ageing-in-mice-1.20263  Original web page at Nature

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Human intelligence measured in the brain

Human intelligence is being defined and measured for the first time ever, by researchers at the University of Warwick.

Led by Professor Jianfeng Feng in the Department of Computer Science, studies at Warwick and in China have been recently undertaken to quantify the brain’s dynamic functions, and identify how different parts of the brain interact with each other at different times — namely, to discover how intellect works.

Professor Jianfeng finds that the more variable a brain is, and the more its different parts frequently connect with each other, the higher a person’s IQ and creativity are.

More accurate understanding of human intelligence could lead to future developments in artificial intelligence (AI). Currently, AI systems do not process the variability and adaptability that is vital, as evidenced by Professor Jianfeng’s research, to the human brain for growth and learning. This discovery of dynamic functions inside the brain could be applied to the construction of advanced artificial neural networks for computers, with the ability to learn, grow and adapt.

This study may also have implications for a deeper understanding of another largely misunderstood field: mental health. Altered patterns of variability were observed in the brain’s default network with schizophrenia, autism and Attention Deficit Hyperactivity Disorder (ADHD) patients. Knowing the root cause of mental health defects brings scientists exponentially closer to treating and preventing them in the future.

Using resting-state MRI analysis on thousands of people’s brains around the world, the research has found that the areas of the brain which are associated with learning and development show high levels of variability, meaning that they change their neural connections with other parts of the brain more frequently, over a matter of minutes or seconds. On the other hand, regions of the brain which aren’t associated with intelligence — the visual, auditory, and sensory-motor areas — show small variability and adaptability.

Professor Jianfeng Feng commented that new technology has made it possible to conduct this trail-blazing study: “human intelligence is a widely and hotly debated topic and only recently have advanced brain imaging techniques, such as those used in our current study, given us the opportunity to gain sufficient insights to resolve this and inform developments in artificial intelligence, as well as help establish the basis for understanding and diagnosis of debilitating human mental disorders such as schizophrenia and depression.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160718110938.htm Original web page at Science Daily

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No blood vessels without cloche

The decade-long search by researchers worldwide for a gene, which is critical in controlling the formation of blood and blood vessels in the embryo, shows how fascinating science can be. It is more than 20 years since Didier Stainier, director at the Max Planck Institute for Heart and Lung Research in Bad Nauheim, discovered a zebrafish mutant named cloche. This mutant lacks development of both blood vessels and blood cells, and was, until now, a unique phenomenon. Now, his research group has succeeded in finding the gene responsible for it. It had quasi hidden itself at the very end of chromosome 13 and was discovered using the latest molecular biological methods. The discovery of the gene is not only of scientific interest, but could also become important for regenerative medicine.

At a very early stage of embryonic development, blood vessels and blood cells form from common progenitor cells. The timing and manner in which the blood and vessels form is regulated in a genetic program by multiple genes. This program is characterized by a cascade-like activity pattern. In the mid-nineties, during his time in the United States, Didier Stainier, Director of the Department of Developmental Genetics at the Max Planck Institute for Heart and Lung Research in Bad Nauheim, discovered in the model organism zebrafish, a mutant “possessing one of the most exciting developmental defects ever found in zebrafish,” says Sven Reischauer who, together with Oliver Stone and Alethia Villasenor, is one of the main authors of the study. Due to a genetic change in this fish, none of the genes involved in the genetic program for blood and blood vessel cells were activated. Consequently, these cells cannot develop. Stainier named the mutant “cloche” after another unique feature of the mutant, a cloche-like heart shape.

In the last two decades, various laboratories around the world took part in a real hunt for the gene behind the mutant. “Identifying Cloche was, for all of us, like solving a decades-old criminal case of genetics. However, in this case, it was not the perpetrator who was unknown but the victim, the defective gene,” says Reischauer. The Max Planck researchers in Bad Nauheim, together with international partners, have now successfully finished this hunt.

“The search was made extremely complicated due to the fact that the cloche gene is located at the very end of chromosome 13, in a telomeric region,” says Reischauer. Now, with methods, which have only recently become available (for example, CRISPR/Cas9 and TALEN), do we have the tools to analyse these areas. “In addition, we had to assume that the gene is only active prior to the time at which the lack of vascular growth is evident. This made it much more difficult to identify the embryos,” says Reischauer.

First, the Bad Nauheim researchers examined the entire portion of the genome in which they suspected cloche to be located. Analysis of data from 26,000 genes revealed 17 genes, which could be regarded as potential candidates. Then, they deactivated all of these candidate genes separately by producing knockout lines, and examined the blood vessel growth in these embryos. “Only in one case did we find the expected picture, namely that vessel growth failed to be induced. Then we were sure that we had found the cloche gene,” says Reischauer.

In additional experiments, the Max Planck scientists showed how important Cloche is for the development of blood vessels and blood cells in the embryo: It transpired that all genes which were previously known to be involved in vessel formation, are only active after Cloche has been active. Accordingly, Cloche itself controls the activity of the entire program.

This scenario was confirmed in so-called overexpression experiments in which the researchers injected pure cloche mRNA into embryos. This approach enabled them to start the program for vascular and blood cell formation at a time during embryo development at which it is not normally active. “We could, therefore, propose we had found the gene responsible for controlling the developmental program,” says Stainier.

Cloche seems to be highly conserved in nature: The gene is present even in birds. In mammals there is a closely related gene that can take over the function of cloche in the zebrafish model. Therefore, the Bad Nauheim scientists assume “that with the identification of the gene and its function, there will be great opportunities to develop new applications in the context of personalized stem cell therapy,” Stainier says.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160718110936.htm Original web page at Science Daily

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‘Big mama’ bonobos help younger females stand up for themselves

Female bonobo coalitions more easily defeat aggressive males. Bullying happens in the primate world too, but for young bonobo females, big mama comes to the rescue. Japanese primatologists report in Animal Behaviour that older bonobo females frequently aid younger females when males behave aggressively towards them.

“We may have uncovered one of the ways in which females maintain a superior status in bonobo society,” says lead author Nahoko Tokuyama of Kyoto University.

In their study, Tokuyama and fellow researcher Takeshi Furuichi observed a group of wild bonobos at Wamba, Democratic Republic of the Congo.

“Primate females sometimes forge partnerships to attack others. Typically, such coalitions are formed between relatives to protect useful resources from non-relatives.” says Tokuyama. “For bonobos, females leave their birth group during adolescence, so females in a group are generally non-relative to each other. Despite this, they frequently form coalitions; a major research goal for us was to highlight the dynamics in which coalition-forming happens in non-relative individuals.”

Through four years of observation they found that all female coalitions were formed to attack males, usually after males behaved aggressively toward one or more females. They also found that older females have better chances of winning when the battle is one-one-one, and when females form alliances they always win over males. What’s more, the older females don’t play favorites; whether a younger female is friendlier with the older female has no relation to whether the older female comes to help.

Tokuyama observes that coalition-forming in female bonobos may have evolved as a way to combat male harassment. “Young females have a lower social status than males, but protection from older females seem to let young females join the group without fear of being attacked by males. By controlling aggression by males in this manner, females maintain overall superiority in the social hierarchy.

“It’s beneficial for the older females as well, because the younger females start spending more time with them in hopes of getting protection. This way, the older female can give her son more opportunities to mate with the younger females. Such partnerships might in fact be the very factor that fosters gregariousness and promotes tolerance among females.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160719105718.htm Original web page at Science Daily

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Ridiculously cute mouse lemurs hold key to Madagascar’s past

“For a long time, scientists weren’t sure how or why Madagascar’s biogeography changed in very recent geological time, specifically at the key period around when humans arrived on the island a few thousand years ago. It has been proposed they heavily impacted the Central Highland forests,” says Steve Goodman, MacArthur Field Biologist at The Field Museum in Chicago, who co-authored the study and has been studying Malagasy animals for thirty years. “This study shows the landscape was changing thousands of years before humans arrived.”

So scientists wanted to learn about the history of Madagascar’s landscape — why study mouse lemurs? The tiny primates are the perfect combination of fast-breeding, hardy, and unique to the island. “They reach reproductive maturity within a year, and that means that a lot of generations are produced very quickly,” explains Goodman. “That enables us to see evolution at work faster than we would in an animal that took, say, five years to first reproduce.” The lemurs, which are found only on Madagascar, live across much of the island, even forested areas that have been damaged by humans. That means that for scientists studying how the island changed over time, mouse lemurs are a jackpot. “The mouse lemurs are forest dependent — as the forest changes, they change. By studying how mouse lemurs evolved in different areas of the island, we’re able to glimpse how the island itself changed and learn whether those changes were caused by humans,” says Goodman.

By analyzing DNA from five different mouse lemur species, the scientists were able to tell when the different kinds of lemurs branched out from each other. “We were able to characterize tens of thousands of changes in the genomes of mouse lemurs that are now isolated and form separate species. By analyzing these DNA changes, we were able to understand when the species diverged from each other, and by inference, identify the ecological forces that might have driven them apart,” says Anne Yoder, Director of the Duke University Lemur Center and lead author on the paper.

“When we analyzed the mouse lemurs’ DNA, we were able to see genetic similarities between lemur species that are closely related but today live far apart from each other. That suggests that their ancestors were able to disperse across forested habitat that no longer exists — portions of the Central Highlands that formed the bridge between the eastern and western parts of the island today,” explains Goodman. Instead, the scientists believe, Madagascar was covered by a patchwork of forests, enabling the mouse lemurs to slowly disperse over tens of thousands of years between different areas. Then, once those bridges did not exist anymore, the populations became isolated.

The DNA analysis allowed the scientists to infer the timeline for the habitat changes of the Central Highlands — it happened thousands of years before humans arrived on the island. “At least at first, the changes to this region of the island were almost certainly the result of natural climate change over the past approximately 50,000 years,” says Goodman.

The study also indicates that the former forested areas of the Central Highlands may have been an important zone of ecological transition between the extremes of eastern humid forests and western dry forests. This has important implications for understanding how the mid-section of the island served as a zone of dispersal for animals, such as mouse lemurs and many others. “We’ve learned that it’s probably incorrect to talk about Madagascar’s humid east and dry west like they’re two completely separate habitats,” says Goodman. “The eastern and western parts of the island are just different extremes on the continuum.”

“Madagascar is one of the top conservation priorities in the world,” says Goodman. “All of the native land mammals on Madagascar occur nowhere else in the world. This study is important because it sheds light upon the long-term life history of Madagascar, before human colonization. It helps us understand change.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160718160927.htm Original web page at Science Daily

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Protein found to bolster growth of damaged muscle tissue

Johns Hopkins University biologists have found that a protein that plays a key role in the lives of stem cells can bolster the growth of damaged muscle tissue, a step that could potentially contribute to treatments for muscle degeneration caused by old age and diseases such as muscular dystrophy.

The results, published online by the journal Nature Medicine, show that a particular type of protein called integrin is present on the stem cell surface and used by stem cells to interact with, or “sense” their surroundings. How stem cells sense their surroundings, also known as the stem cell “niche,” affects how they live and last for regeneration. The presence of the protein β1-integrin was shown to help promote the transformation of those undifferentiated stem cells into muscle after the tissue has degraded, and improve regenerated muscle fiber growth as much as 50 percent.

While the presence of β1-integrin in adult stem cells is apparent, “its role in these cells has not been examined,” especially its influence on the biochemical signals promoting stem cell growth, wrote the three authors, Chen-Ming Fan, an adjunct biology professor; Michelle Rozo, who completed her doctorate in biology at Johns Hopkins this year; and doctoral student Liangji Li.

The experiment shows that β1-integrin — one of 28 types of integrin — maintains a link between the stem cell and its environment, and interacts biochemically with a growth factor called fibroblast growth factor [FGF] to promote stem cell growth and restoration after muscle tissue injury. Aged stem cells do not respond to FGF, and the results also show that β1-integrin restores aged stem cell’s ability to respond to FGF to grow and improve muscle regeneration.

By tracking an array of proteins inside the stem cells, the researchers tested the effects of removing β1-integrin from the stem cell. This is based on the understanding that the activities of stem cells — undifferentiated cells that can become specialized — are dependent on their environment and supported by the proteins found there.

“If we take out β1-integrin, all these other (proteins) are gone,” said Fan, the study’s senior author and a staff member at the Carnegie Institution for Science in Washington and Baltimore.

Why that is the case is not clear, but the experiment showed that without β1-integrin, stem cells could not sustain growth after muscle tissue injury.

By examining β1-integrin molecules and the array of proteins that they used to track stem cell activity in aged muscles, the authors found that all of these proteins looked like they had been removed from aged stem cells. They injected an antibody to boost β1-integrin function into aged muscles to test whether this treatment would enhance muscle regeneration. Measurements of muscle fiber growth with and without boosting the function of β1-integrin showed that the protein led to as much as 50-percent more regeneration in cases of injury in aged mice.

When the same β1-integrin function-boosting strategy was applied to mice with muscular dystrophy, the muscle was able to increase strength by about 35 percent.

Fan said the team’s research will next try to determine what is happening inside the stem cells as they react with their immediate environment, as a step to understanding more about the interaction of the two. That, in turn, could help refine the application of integrin as a therapy for muscular dystrophy and other diseases, and for age-related muscle degeneration.

“We provide here a proof-of-principle study that may be broadly applicable to muscle diseases that involve SC (stem cell) niche dysfunction,” the authors wrote. “But further refinement is needed for this method to become a viable treatment.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160719131341.htm Original web page at Science Daily

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Beware of antioxidant supplements, warns scientific review

The lay press and thousands of nutritional products warn of oxygen radicals or oxidative stress and suggest taking so-called antioxidants to prevent or cure disease. Professor Pietro Ghezzi at the Brighton and Sussex Medical School and Professor Harald Schmidt at the University of Maastricht have analyzed the evidence behind this. The result is a clear warning: do not take these supplements unless a clear deficiency is diagnosed by a healthcare professional.

Humans depend on oxygen to produce energy, but oxygen also has the potential to generate so-called oxygen radicals, which may cause oxidative stress and disease. Markers of oxidative stress have been correlated with cardiovascular disease, cancer, diabetes, and other conditions. Because of these associations, antioxidant supplements are taken by millions of people; however, none of the antioxidants tested in randomized clinical trials have demonstrated any benefit. On the contrary, some of them may cause harm.

This is because oxygen radicals not only trigger disease but also perform many important functions in the body, such as for immune defense and hormone synthesis. Thus anti-oxidants will interfere with both healthy and disease-triggering oxygen molecules.

“Oxidative stress could be important in some conditions and only in a small proportion of patients,” said Prof. Ghezzi. “It can be targeted in a totally different manner, with drugs targeted only at those sources of oxygen molecules that are triggers of disease and leave the healthy ones alone,” added Prof. Schmidt. The review is published the British Journal of Pharmacology.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160719094130.htm  Original web page at Science Daily

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Chimpanzees who travel are more frequent tool users

Chimpanzees who travel are more frequent tool users, according to new findings from the University of Neuchâtel and the University of Geneva, Switzerland, to be published in eLife.

Hawa is a wild chimpanzee from the Budongo Forest in Uganda who burns up a lot of energy travelling, which he has learnt to replenish with a dose of honey. His friend Squibs makes less of an effort to roam and has not acquired the skills needed to enjoy this high-energy treat. This pattern was repeated in other members of the study group over seven years of observation.

A low quantity of ripe fruit also increases chimpanzees’ motivation to acquire new foraging skills, but the effect is less pronounced than travel.

“Our results show that travel fosters tool use in wild chimpanzees and it may also have been a driving force in early technological evolution by humans,” says Dr Thibaud Gruber from the University of Geneva.

The team reviewed data from nine other chimpanzee communities to confirm the pattern. Chimpanzees’ closest relative, the Bonobo, travels around the same average distance as the Sonso and other Ugandan chimpanzees and uses a similar set of tools. Gorillas and most orangutans show limited or no feeding-related tool use and spend significantly less time travelling per day on the ground compared to chimpanzees. In contrast, modern human hunter-gatherers walk on average 11.4-14.1 km per day and use many more tools than any of the great apes.

Gruber studied 70 individuals of the Sonso community of chimpanzees, Pan troglodytes schweinfurthii, known for its limited tool use behaviour. This made them ideal subjects to study how tool use emerges. The only feeding-related tools they use are folded leaves, usually to collect water, and moss to soak up mineral deposits from a clay pit. 52 of them engaged with the experiment.

“After seven years of field work, I had a massive amount of data and there was clear variation in how chimpanzees engaged with the experiment. I thought it would be interesting to analyse why,” says Gruber.

He deployed the “honey trap experiment.” The Sonso chimpanzees already used their fingers to take honey from bees’ nests, with limited success. In the “honey trap” experiment, a hole is drilled into a log and partially filled with this tempting prize so it can only be accessed with an implement. Most of the individuals who successfully extracted honey employed the community’s habitual tool, a folded leaf sponge, while two used a stick. A total of 21 instances of tool use were observed in 11 individuals.

The team reviewed the data against a whole range of variables including the quantity of ripe fruits eaten and the average daily distance the chimpanzees travelled.

“We didn’t expect travel to be that important, and were surprised that it had an even greater influence than if they fed less on their preferred food of ripe fruits,” says Gruber.

The team conclude that travel created an extra need for high-energy food while the challenge of inaccessible honey created an opportunity for innovation. The team did not analyse the potential influence of social learning to influence it. In 2011, Gruber and a colleague Catherine Hobaiter from the University of St Andrews discovered that the community’s use of moss as a sponge emerged from one individual named Nick, whose behavior was copied by a dominant female and quickly spread.

The study also reveals the influence of local ecology in the development of tool use. The Budongo Forest has provided a rich environment for chimpanzees, which could explain the previous lack of tool use in the Sonso community. However, in the last few decades, the food supply has steadily decreased.

It has been suggested that the development of tool use and sociality in early humans could likewise have been adaptive responses to heightened habitat instability caused by climate change.

“When times are changing, you have to adapt your behavior and our data illustrate that chimps will pay more attention to the possibilities offered by their environment in more demanding periods,” says Gruber.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160719091722.htm  Original web page at Science Daily

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* Model helps identify drugs to treat cat eye infections

It’s a problem veterinarians see all the time, but there are few treatments. Feline herpes virus 1 (FHV-1) is a frequent cause of eye infections in cats, but the drugs available to treat these infections must be applied multiple times a day and there is scant scientific evidence to support their use.

Now scientists at the Baker Institute for Animal Health at Cornell’s College of Veterinary Medicine have developed a model system that can be used to test drugs for treating these eye infections, and early results have pointed to a new drug for treating FHV-1 that will soon head to clinical trials. The work is reported in the Journal of General Virology.

“Herpes-induced cornea infections are a big problem in cats,” says Dr. Gerlinde Van de Walle, who led the study. Cats infected with FHV-1 will blink continuously, squint and have a teary, sore-looking eye or eyes. “If not treated, FHV-1 infection can eventually lead to blindness,” she says.

“We wanted to develop a model system that could predict whether an antiviral drug would work against FHV-1 in cats,” says Van de Walle. They were also searching for an easy way to identify drugs that could be given only once every 24 hours, because, as vets and many cat owners know, giving medication to a cat multiple times a day can be a difficult, painful thing to accomplish. Smearing ointment in a cat’s eyes might be easy the first and second time, but once the cat learns what you’re up to with that little tube, she will most likely hide or fight.

Van de Walle and her team used tissues donated from cats that died of causes other than eye disease. The outer clear layer of the eye, called the cornea, is shaped like a contact lens but has the consistency of Jell-O. To maintain the natural, dome-shaped structure of these corneas under laboratory conditions, the team gently filled them with agarose, waited for the agarose to firm up, then turned them over and kept them in a liquid medium. The model better resembles what happens in the eyes of a cat compared with using a single layer of cells in a dish and can, therefore, better predict what to expect in the animal.

To use these petri plate corneas as a model of FHV-1 infection, they applied the virus to some of the corneas and left others uninfected. They then tested the effectiveness of two drugs that are used for topical treatment of FHV-1 eye infections in cats: cidofovir, which is frequently used in the clinic, and acyclovir, which has shown some activity when given frequently. Both drugs cleared the infection when applied every 12 hours, but cidofovir was more effective.

Taking it a step further, Van de Walle and her team used the model system to identify another drug for treating FHV-1 infections. The antiretroviral drug raltegravir is commonly used in humans to treat HIV infections, and although some reports indicated it could be effective against herpes viruses, it had never been used to treat FHV-1 in cats before.

“We found that it is very effective against FHV-1. It even worked when we applied the drug only once every 24 hours,” says Van de Walle. This means raltegravir could be just as efficient as the other drugs available for treating FHV-1 infections, but would only have to be administered once daily. Van de Walle says she hopes eventually to see the drug tested in a well-controlled clinical trial.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160719123900.htm Original web page at Science Daily

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New discovery on how the inner ear works

Researchers have found that the parts of the inner ear that process sounds such as speech and music seem to work differently than other parts of the inner ear. Researchers from Linköping University are part of the team behind the discovery.

“This helps us understand the mechanisms that enable us to perceive speech and music. We hope that more knowledge about the capabilities of the ear will lead to better treatments for the hearing impaired,” says Anders Fridberger, professor of neuroscience at Linköping University.

To perceive speech and music, you must be able to hear low-frequency sound. And to do this, the brain needs information from the receptors, which are located close to the top of the cochlea, the spiral cavity in the inner ear. This part of the inner ear is difficult to study, as it is embedded in thick bone that is hard to make holes in, without causing damage. Now the international research team has been able to measure, in an intact inner ear, how the hearing organ reacts to sound. The results have been published in PNAS, the Proceedings of the National Academy of Sciences.

To measure in the hearing organ, the researchers used optical coherence tomography, a visualization technology for biological matter that is often used to examine the eye.

“We have been able to measure the inner ear response to sound without having to open the surrounding bone structures and we found that the hearing organ responds in a completely different way to sounds in the voice-frequency range. It goes against what was previously thought of how the inner ear works.

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/07/160711092510.htm Original web page at Science Daily

 

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Current stimulation to the brain partially restores vision in patients with glaucoma and optic nerve damage

Vision loss due to glaucoma or optic nerve damage is generally considered irreversible. Now a new prospective, randomized, multi-center clinical trial demonstrates significant vision improvement in partially blind patients after 10 days of noninvasive, transorbital alternating current stimulation (ACS). In addition to activation of their residual vision, patients also experienced improvement in vision-related quality of life such as acuity, reading, mobility or orientation. The results are reported in PLOS ONE.

“ACS treatment is a safe and effective means to partially restore vision after optic nerve damage probably by modulating brain plasticity, re-synchronizing brain networks, which were desynchronized by vision loss. This class 1 evidence is the first ever large-scale multi-center clinical trial in the field of non-invasive brain modulation using electric currents and suggests that visual fields can be improved in a clinically meaningful way,” commented lead investigator Bernhard A. Sabel, PhD, of the Institute of Medical Psychology, Medical Faculty, Otto-von-Guericke University of Magdeburg (Germany).

In a study conducted at three German clinical centers (University of Göttingen, Charité Berlin, and University of Magdeburg), 82 patients were enrolled in a double-blind, randomized, sham-controlled clinical trial, 33 with visual deficits caused by glaucoma and 32 with anterior ischemic optic neuropathy caused by inflammation, optic nerve compression (due to tumors or intracranial hemorrhage), congenital anomalies, or Leber’s hereditary optic neuropathy. Eight patients had more than one cause of optic nerve atrophy.

The groups were randomized so that 45 patients underwent 10 daily applications of ACS for up to 50 minutes per day over a two-week period and 37 patients received sham stimulation. The only difference between groups before treatment was that the stimulation group included more men than the sham group; no other differences were found, including age of the lesion or visual field characteristics. ACS was applied with electrodes on the skin near the eyes. Vision was tested before and 48 hours after completion of treatment, and then again two months later to check if any changes were long-lasting.

Patients receiving ACS showed significantly greater improvements in perceiving objects in the whole visual field than individuals in the sham-treated group. Specifically, when measuring the visual field, a 24% improvement was noted after treatment in the ACS group compared to a 2.5% improvement in the sham group. This was due to significant improvements in the defective visual field sector of 59% in the ACS group and 34% in the sham group which received a minimal stimulation protocol. Further analyses showed improvements in the ACS group at the edges of the visual field. The benefits of stimulation were found to be stable two months later, as the ACS group showed a 25% improvement in the visual field compared to negligible changes (0.28%) in the sham group.

Patient safety measures were maintained at a high level, in line with previous studies. Current flow was assessed using sophisticated computer simulation models. No participants reported discomfort during stimulation, although temporary dizziness and mild headaches were reported in rare cases.

The study results are in line with previous small sample studies in which efficacy and safety were observed. Those studies revealed that well-synchronized dynamic brain functional networks are critical for vision restoration. Although vision loss leads to de-synchronization, these neural networks can be re-synchronized by ACS via rhythmic firing of the ganglion cells of the retina, activating or “amplifying” residual vision. Dr. Sabel added that “while additional studies are needed to further explore the mechanisms of action, our results warrant the use of ACS treatment in a clinical setting to activate residual vision by brain network re-synchronization. This can partially restore vision in patients with stable vision loss caused by optic nerve damage.”

In summary, vision loss, long considered to be irreversible, can be partially reversed. There is now more light at the end of the tunnel for patients with low vision or blindness following glaucoma and optic nerve damage.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/06/160629145208.htm  Original web page at Science Daily

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It’s not just a grunt: Pigs really do have something to say

The grunts made by pigs vary depending on the pig’s personality and can convey important information about the welfare of this highly social species, new research has found.

Scientists specialising in animal behaviour and welfare devised an experiment to investigate the relationship between personality and the rate of grunting in pigs. They also examined the effect different quality living conditions had on these vocalisations.

Findings from the study, carried out by researchers from the University of Lincoln, UK, and Queens University Belfast, are published in the Royal Society journal Open Science.

The study involved 72 male and female juvenile pigs. Half were housed in spacious ‘enriched’ pens with straw bedding, while the other half were kept in more compact ‘barren’ pens with partially slatted concrete floors, which adhered to UK welfare requirements.

To get a measure of the pigs’ personalities, the researchers conducted two tests: a social isolation test and a novel object test. Each pig spent three minutes in social isolation, and five minutes in a pen with a large white bucket or an orange traffic cone they had not previously encountered. Their behaviour, including vocalisations, were observed. These tests were repeated two weeks later, allowing the researchers to determine if the pigs’ responses were repeatable — the defining characteristic of personality (also known as ‘coping style’ in animals).

They also recorded the frequency of grunts they made by counting the number of grunts produced per minute of the test, and investigated the effect different quality environments had on the sounds made.

The study indicated that pigs with more proactive personality types produced grunts at a higher rate than the more reactive animals. The study also found that male pigs (but not females) kept in the lower-quality conditions made fewer grunts compared with those housed in the enriched environment, suggesting greater susceptibility among male pigs to environmental factors.

The results add to evidence that acoustic signalling indicates personality in pigs. This may have had far reaching consequences in shaping the evolution of social behaviours, the researchers believe. The findings also suggest personality needs to be kept in mind when using vocalisation as a measure of the animals’ welfare status.

Principal investigator, Dr Lisa Collins, a specialist in animal health, behaviour and welfare epidemiology in the School of Life Sciences at the University of Lincoln, said: “The domestic pig is a highly social and vocal species which uses acoustic signals in a variety of ways; maintaining contact with other group members while foraging, parent-offspring communication, or to signal if they are distressed.

“The sounds they make convey a wide range of information such as the emotional, motivational and physiological state of the animal. For example, squeals are produced when pigs feel fear, and may be either alerting others to their situation or offering assurance. Grunts occur in all contexts, but are typical of foraging to let other members of the group know where they are.”

Mary Friel, lead author of the study and PhD student at Queen’s University Belfast, added: “The aim of this research was to investigate what factors affect vocalisations in pigs so that we can better understand what information they convey. Understanding how the vocalisations of pigs’ relate to their personality will also help animal behaviourists and welfare experts have a clearer picture of the impact those personalities have on communication, and thus its role in the evolution of social behaviour and group dynamics in social species.”

https://www.sciencedaily.com/ Science Daily

https://www.sciencedaily.com/releases/2016/06/160629100349.htm  Original web page at Science Daily

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Artificial pancreas likely to be available by 2018

 

The artificial pancreas — a device which monitors blood glucose in patients with type 1 diabetes and then automatically adjusts levels of insulin entering the body — is likely to be available by 2018, conclude authors of a paper in Diabetologia (the journal of the European Association for the Study of Diabetes). Issues such as speed of action of the forms of insulin used, reliability, convenience and accuracy of glucose monitors plus cybersecurity to protect devices from hacking, are among the issues that are being addressed.

Currently available technology allows insulin pumps to deliver insulin to people with diabetes after taking a reading or readings from glucose meters, but these two components are separate. It is the joining together of both parts into a ‘closed loop’ that makes an artificial pancreas, explain authors Dr Roman Hovorka and Dr Hood Thabit of the University of Cambridge, UK. “In trials to date, users have been positive about how use of an artificial pancreas gives them ‘time off’ or a ‘holiday’ from their diabetes management, since the system is managing their blood sugar effectively without the need for constant monitoring by the user,” they say.

One part of the clinical need for the artificial pancreas is the variability of insulin requirements between and within individuals — on one day a person could use one third of their normal requirements, and on another 3 times what they normally would. This is dependent on the individual, their diet, their physical activity and other factors. The combination of all these factors together places a burden on people with type 1 diabetes to constantly monitor their glucose levels, to ensure they don’t end up with too much blood sugar (hyperglycaemic) or more commonly, too little (hypoglycaemic). Both of these complications can cause significant damage to blood vessels and nerve endings, making complications such as cardiovascular problems more likely.

There are alternatives to the artificial pancreas, with improvements in technology in both whole pancreas transplantation and also transplants of just the beta cells from the pancreas which produce insulin. However, recipients of these transplants require drugs to supress their immune systems just as in other organ transplants. In the case of whole pancreas transplantation, major surgery is required; and in beta cell islet transplantation, the body’s immune system can still attack the transplanted cells and kill off a large proportion of them (80% in some cases). The artificial pancreas of course avoids the need for major surgery and immunosuppressant drugs.

Researchers globally continue to work on a number of challenges faced by artificial pancreas technology. One such challenge is that even fast-acting insulin analogues do not reach their peak levels in the bloodstream until 0.5 to 2 hours after injection, with their effects lasting 3 to 5 hours. So this may not be fast enough for effective control in, for example, conditions of vigorous exercise. Use of the even faster acting ‘insulin aspart’ analogue may remove part of this problem, as could use of other forms of insulin such as inhaled insulin. Work also continues to improve the software in closed loop systems to make it as accurate as possible in blood sugar management.

A number of clinical studies have been completed using the artificial pancreas in its various forms, in various settings such as diabetes camps for children, and real life home testing. Many of these trials have shown as good or better glucose control than existing technologies (with success defined by time spent in a target range of ideal blood glucose concentrations and reduced risk of hypoglycaemia). A number of other studies are ongoing. The authors say: “Prolonged 6- to 24-month multinational closed-loop clinical trials and pivotal studies are underway or in preparation including adults and children. As closed loop devices may be vulnerable to cybersecurity threats such as interference with wireless protocols and unauthorised data retrieval, implementation of secure communications protocols is a must.”

The actual timeline to availability of the artificial pancreas, as with other medical devices, encompasses regulatory approvals with reassuring attitudes of regulatory agencies such as the US Food and Drug Administration (FDA), which is currently reviewing one proposed artificial pancreas with approval possibly as soon as 2017. And a recent review by the UK National Institute of Health Research (NIHR) reported that automated closed-loop systems may be expected to appear in the (European) market by the end of 2018. The authors say: “This timeline will largely be dependent upon regulatory approvals and ensuring that infrastructures and support are in place for healthcare professionals providing clinical care. Structured education will need to continue to augment efficacy and safety.”

The authors say: “Cost-effectiveness of closed-loop is to be determined to support access and reimbursement. In addition to conventional endpoints such as blood sugar control, quality of life is to be included to assess burden of disease management and hypoglycaemia. Future research may include finding out which sub-populations may benefit most from using an artificial pancreas. Research is underway to evaluate these closed-loop systems in the very young, in pregnant women with type 1 diabetes, and in hospital in-patients who are suffering episodes of hyperglycaemia.”

They conclude: “Significant milestones moving the artificial pancreas from laboratory to free-living unsupervised home settings have been achieved in the past decade. Through inter-disciplinary collaboration, teams worldwide have accelerated progress and real-world closed-loop applications have been demonstrated. Given the challenges of beta-cell transplantation, closed-loop technologies are, with continuing innovation potential, destined to provide a viable alternative for existing insulin pump therapy and multiple daily insulin injections.”

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/06/160630214503.htm  Original web page at Science Daily

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* Treating autoimmune disease without harming normal immunity

Preclinical study shows that engineered T cells can selectively target the antibody-producing cells that cause autoimmune disease.

In a study with potentially major implications for the future treatment of autoimmunity and related conditions, scientists from the Perelman School of Medicine at the University of Pennsylvania have found a way to remove the subset of antibody-making cells that cause an autoimmune disease, without harming the rest of the immune system. The autoimmune disease the team studied is called pemphigus vulgaris (PV), a condition in which a patient’s own immune cells attack a protein called desmoglein-3 (Dsg3) that normally adheres skin cells.

Current therapies for autoimmune disease, such as prednisone and rituximab, suppress large parts of the immune system, leaving patients vulnerable to potentially fatal opportunistic infections and cancers.

The Penn researchers demonstrated their new technique by successfully treating an otherwise fatal autoimmune disease in a mouse model, without apparent off-target effects, which could harm healthy tissue. The results are published in an online First Release paper in Science.

“This is a powerful strategy for targeting just autoimmune cells and sparing the good immune cells that protect us from infection,” said co-senior author Aimee S. Payne, MD, PhD, the Albert M. Kligman Associate Professor of Dermatology.

Payne and her co-senior author Michael C. Milone, MD, PhD, an assistant professor of Pathology and Laboratory Medicine, adapted the technique from the promising anti-cancer strategy by which T cells are engineered to destroy malignant cells in certain leukemias and lymphomas.

“Our study effectively opens up the application of this anti-cancer technology to the treatment of a much wider range of diseases, including autoimmunity and transplant rejection,” Milone said.

The key element in the new strategy is based on an artificial target-recognizing receptor, called a chimeric antigen receptor, or CAR, which can be engineered into patients’ T cells. In human trials, researchers remove some of patients’ T cells through a process similar to dialysis and then engineer them in a laboratory to add the gene for the CAR so that the new receptor is expressed in the T cells. The new cells are then multiplied in the lab before re-infusing them into the patient. The T cells use their CAR receptors to bind to molecules on target cells, and the act of binding triggers an internal signal that strongly activates the T cells — so that they swiftly destroy their targets.

The basic CAR T cell concept was first described in the late 1980s, principally as an anti-cancer strategy, but technical challenges delayed its translation into successful therapies. Since 2011, though, experimental CAR T cell treatments for B cell leukemias and lymphomas — cancers in which patients’ healthy B cells turn cancerous — have been successful in some patients for whom all standard therapies had failed.

B cells, which produce antibodies, can also cause autoimmunity. Payne researches autoimmunity, and a few years ago, a postdoctoral researcher in her laboratory, Christoph T. Ellebrecht, MD, took an interest in CAR T cell technology as a potential weapon against B cell-related autoimmune diseases. Soon Payne’s lab teamed up with Milone’s, which studies CAR T cell technology, in the hope of finding a powerful new way to treat these ailments.

“We thought we could adapt this technology that’s really good at killing all B cells in the body to target specifically the B cells that make antibodies that cause autoimmune disease,” said Milone.

“Targeting just the cells that cause autoimmunity has been the ultimate goal for therapy in this field,” noted Payne.

Ellebrecht was first author, the team took aim at pemphigus vulgaris. This condition occurs when a patient’s antibodies attack molecules that normally keep skin cells together. When left untreated, PV leads to extensive skin blistering and is almost always fatal, but in recent decades the condition has been treatable with broadly immunosuppressive drugs such as prednisone, mycophenolate mofetil, and rituximab.

To treat PV without causing broad immunosuppression, the Penn team designed an artificial CAR-type receptor that would direct patients’ T cells to attack only the B cells producing harmful anti-Dsg3 antibodies.

The team developed a “chimeric autoantibody receptor,” or CAAR, that displays fragments of the autoantigen Dsg3 — the same fragments to which PV-causing antibodies and their B cells typically bind, as Payne’s laboratory and others have shown in prior studies. The artificial receptor acts as a lure for the B cells that target Dsg3, bringing them into fatal contact with the therapeutic T cells.

Testing many variants, the team eventually found an artificial receptor design that worked well in cell culture, enabling host T cells to efficiently destroy cells producing antibodies to desmoglein, including those derived from PV patients. The engineered T cells also performed successfully in a mouse model of PV, killing desmoglein-specific B cells and preventing blistering and other manifestations of autoimmunity in the animals.

“We were able to show that the treatment killed all the Dsg3-specific B cells, a proof of concept that this approach works,” Payne said.

T cell therapies can be complicated by many factors. But in these experiments, the Penn scientists’ engineered cells maintained their potency despite the presence of anti-Dsg3 antibodies that might have swarmed their artificial receptors. In addition, there were no signs that the engineered T cells caused side effects by hitting the wrong cellular targets in the mice.

The team now plans to test their treatment in dogs, which can also develop PV and often die from the disease. “If we can use this technology to cure PV safely in dogs, it would be a breakthrough for veterinary medicine, and would hopefully pave the way for trials of this therapy in human pemphigus patients,” Payne said.

Also on the horizon for the Penn scientists are applications of CAAR T cell technology for other types of autoimmunity. The immune rejection that complicates organ transplants, and normally requires long-term immunosuppressive drug therapy, may also be treatable with CAAR T cell technology.

“If you can identify a specific marker of a B cell that you want to target, then in principle this strategy can work,” Payne said.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/06/160630144409.htm  Original web page at Science Daily

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Unsilencing silenced genes by CRISPR/Cas9

Scientists have developed a new technique to unleash silenced genes and change cell fates using CRISPR/Cas9.

The ability to control gene expression in cells allows scientists to understand gene function and manipulate cell fate. Recently, scientists have developed a revolutionary gene-editing tool, called CRIPSR/Cas9, which employs a system naturally used by bacteria as protection against viruses. The tool allows scientists to precisely add, remove or replace specific parts of DNA. CRISPR/Cas9 is the most efficient, inexpensive and easiest gene-editing tool available to date. However, scientists have not yet managed to effectively use it to activate genes in the cells.

A team, led by Toru Kondo at Hokkaido University’s Institute of Genetic Medicine, has developed a powerful new method that does just that.

Genes in cells have their own switches called promoters. A gene is switched off, or silenced, when its promoter is methylated. The team effectively wanted to turn on a switched-off gene.

They combined a DNA repair mechanism, called MMEJ (microhomology-mediated end-joining), with CRISPR/Cas9. They cut out a methylated promoter using CRISPR/Cas9 and then inserted an unmethylated promoter with MMEJ, replacing the off-switch with an on-switch.

The scientists used this tool on the neural cell gene OLIG2 and the embryonic stem cell gene NANOG to test its efficiency in cultured cells. Within five days, they found evidence that the genes were robustly expressed. When they turned on OLIG2 in cultured human stem cells, the cells differentiated to neurons in seven days with high efficiency.

The scientists also found that their editing tool could be used to activate other silenced promoters. In addition, they found that the system didn’t cause unwanted mutations in other non-targeted genes in the cells. The tool has wide potential to be used to manipulate gene expression, create genetic circuits, or to engineer cell fates.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/07/160701120557.htm  Original web page at Science Daily

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Surprising number of businesses selling unapproved stem cell ‘treatments’ in the US

At least 351 companies across the United States are marketing unapproved stem cell procedures at 570 individual clinics. Such businesses advertise “stem cell” interventions for orthopedic injuries, neurological disorders, cardiac diseases, immunological conditions, pulmonary disorders, injured spinal cords, and cosmetic indications. In Cell Stem Cell on June 30, bioethicist Leigh Turner (@LeighGTurner) and stem cell researcher Paul Knoepfler (@pknoepfler) present an analysis of U.S. businesses engaged in “direct-to-consumer” marketing of these procedures.

“In almost every state now, people can go locally to get stem cell ‘treatments,’’ says Knoepfler, of the University of California, Davis, and Shriners Hospital For Children. “Many people in larger metropolitan areas can just drive 15 minutes to find a clinic offering these kinds of services instead of, say, traveling to Mexico or the Caribbean. I think this reflects a change from what we’ve seen documented in the past and is different from what we typically think about when we think of stem cell tourism.”

Turner and Knoepfler found the businesses through Internet key word searches, text mining, and content analysis of company websites. For each business, the duo recorded the company name, location(s), website addresses, advertised stem cell types, and marketing claims concerning diseases, injuries, and conditions for which stem cells are reportedly administered. Their research should serve as a baseline for future studies of U.S. businesses engaged in direct-to-consumer advertising of purported stem cell interventions.

Key findings from the report include:

  • Clinics advertising stem cell interventions cluster in particular states. They are most likely to be found in California (113 clinics), Florida (104), Texas (71), Colorado (37), Arizona (36), and New York (21).
  • Beverly Hills is home to 18 clinics, more than any other city in the nation, followed by New York (14 clinics), San Antonio (13), Los Angeles (12), Austin (11), Scottsdale (11), and Phoenix (10).
  • Of the stem cell procedures that are marketed, 61% of businesses offer fat-derived stem cell interventions and 48% offer bone-marrow-based treatments. Advertisements for induced pluripotent stem cells (1 business), embryonic stem cells (1 business), and xenogeneic products (2 businesses) are rare.
  • Over 300 of the businesses market interventions for orthopedic issues. Other advertised conditions include pain (150 businesses), sports injuries (90), neurological diseases (80), and immune disorders (75).

“This is a marketplace that is dramatically expanding before our eyes–we were aware early on and tracked it early on, but I don’t think we knew the scope and size of the market,” says Turner, of the Center for Bioethics at the University of Minnesota. “Brakes ought to exist in a marketplace like this, but where are the brakes? Where are the regulatory bodies? And how did this entire industry come into being in a country where stem cell-based interventions and the medical devices that produce them are supposed to be regulated by the FDA?”

Turner and Knoepfler, who runs the popular stem cell blog “The Niche,” grew suspicious of an increase in American stem cell clinics when inquiries from readers and patients changed from Americans asking about going abroad for a stem cell treatment to Americans asking about seeking treatment in the United States. In investigating the people who run these clinics, Turner and Knoepfler found that not only were individuals such as cosmetic surgeons and naturopaths beginning to offer unapproved stem cell interventions, but the “pioneers” in the industry were training others to do the same. It is unclear whether federal authorities–particularly the Food & Drug Administration–and state medical boards missed the scope of the problem or are taking minimal action despite being aware of the spread of such businesses.

“From around 2009 to the present, businesses have been entering the marketplace on a routine basis, they’ve been coming in making marketing assertions about stem cells treating 30-40 different diseases, and no one’s taking meaningful regulatory action,” Turner says. “Does that mean that people are getting access to safe and efficacious interventions or is there basically unapproved human experimentation taking place where people are going to these businesses and receiving experimental investigational cell-based interventions without being given a meaningful account of the lack of knowledge and evidence that they’re being charged for?”

A separate downside is that patients who have unapproved and unproven stem cell interventions decrease their chances of qualifying for FDA-cleared and IRB-approved clinical trials that comply with federal regulations. This is a loss for stem cell research.

“Another serious consideration to think about is that over the years many people have begun to include these businesses in their overall impression of the stem cell field,” Knoepfler says. “There is a real risk that as clinics proliferate, if we don’t address it in a more proactive way, as we see negative outcomes for patients grow and people get mixed bags of information about stem cells, then this could really negatively impact the public perception of this research.

https://www.sciencedaily.com/  Science Daily

https://www.sciencedaily.com/releases/2016/06/160630135852.htm Original web page at Science Daily