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Probiotics could save frogs

Planting bacteria on frogs’ skin might help to save amphibians from their global decline, hints new research. The work shows that frog probiotics can help to fight off a lethal fungus. Many populations of amphibians are plummeting, and some have already gone extinct. One of the major causes is a fungus called Batrachochytrium dendrobatidis, which lives on the skin of some frogs and salamanders. As in humans, amphibians host a community of bacteria on their skin. So Reid Harris at James Madison University in Harrisonburg, Virginia, wondered whether the community carried by amphibians susceptible to B. dendrobatidis had lost its ability to fight off the fungus. To test this idea, Harris and his colleagues isolated different bacteria species from the skin of a common salamander. They put each of these species on top of some B. dendrobatidis growing in a Petri dish — and found that several of them killed off a patch of the fungus.

Now they have shown that at least one of these bacterial species — Pedobacter cryoconitis — can help amphibians to survive. The team allowed red-backed salamanders to swim in a bath of this bacteria for two hours, and then infected them with the lethal fungus. When tested 18 days later, the salamanders given the bacterial bath were nearly 30% more likely to have rid themselves of the fungal infection than were the untreated animals. Harris speculates that the bacterium is probably making a natural antibiotic. He reported his results at a meeting on microbes and conservation at the American Museum of Natural History in New York on 26 April. Another bacterium, called Pseudomonas reactans, actually made the salamanders more susceptible to the fungus, perhaps because it displaced regular, infection-fighting bacteria from the skin. Harris suggests that environmental stresses such as climate change or pollution might change an amphibian’s community of skin bacteria. The stressed animals might make less skin mucus, on which the bacteria feed, or they may make more stress hormones, which would encourage different bacterial species. Exposing threatened amphibians to the fungus-fighting bacteria, perhaps by adding it to ponds or sites that they frequent, might help to reverse some of the population decline, Harris suggests. With few other options available, this strategy is worth pursuing, he says: “It’s the only thing that’s offered a glimmer of hope”.

“I think it’s a very promising area that needs to be pursued,” says Louise Rollins-Smith, who studies amphibian immunology at Vanderbilt University in Nashville, Tennessee. “It’s such an important conservation problem. Any information on a mechanism that could protect them is valuable.” Because it is unclear how long the effect of the bacteria will last, the microbes might have to be introduced again and again. The idea is akin to the probiotic food and drinks that some people swallow to try and change the community of microbes living in their guts. Some researchers are also toying with the idea of developing probiotics for human skin. Probiotics have also been used in aquaculture – in fish food or simply in the water – to try and increase yields. Harris now plans to collaborate with colleagues in California to test whether the probiotic protects the Mountain yellow-legged frog (Rana muscosa), an endangered species that usually succumbs to the fungus.

Nature
May 29, 2007

Original web page at Nature

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Ancient amphibians evolved a bite before migrating to dry land

Ancient aquatic amphibians developed the ability to feed on land before completing the transition to terrestrial life, researchers from Harvard University report this week in the Proceedings of the National Academy of Sciences. Their work is based on analysis of the skulls of the first amphibians, which arose 375 million years ago, and their fish ancestors. The shapes of the junctions between adjacent skull bones — termed “sutures” — in the tops of these fish and amphibian skulls reveal how these extinct animals captured prey, say authors Molly J. Markey and Charles R. Marshall. “Based on experimental data obtained from living fish, we found that the shapes of sutures in the skull roof indicate whether a fish captures its prey by sucking it into the mouth — like a goldfish — or by biting on it directly, like a crocodile,” says Markey, a postdoctoral researcher and lecturer in Harvard’s Department of Earth and Planetary Sciences. “A biting or chewing motion would result in a faint pushing together of the frontal bones in the skull, while a sucking motion would pull those bones ever so slightly apart. By comparing the skull roofs of living fish to those of early amphibians and their fishy ancestors, we were able to determine whether the fossil species fed by suction or by biting.”

Using this approach, Markey and Marshall found that in one key transitional species, the aquatic amphibian Acanthostega, the shapes of the junctions between adjacent skull bones are consistent with biting prey. This finding, the scientists say, suggests that the water-dwelling Acanthostega may have bitten on prey at or near the water’s edge. “Going from the aquatic realm to land involved a series of adaptations to facilitate changes in locomotion, respiration, reproduction, sensation, and feeding,” Markey says. “In water, suction is an efficient method of feeding, but it does not work in the much less dense air environment. Early terrestrial inhabitants would thus have had to develop the means for chomping prey.” Markey and Marshall first measured the skull roof sutures, those areas where the bones of the skull roof meet, in the living fish Polypterus as it fed. They then analyzed the same cranial junctions in several fossils — the early amphibian Acanthostega, its fishy ancestor Eusthenopteron, and the extinct terrestrial amphibian Phonerpeton — to determine how these bones may have moved relative to each other during feeding. By analyzing the tiny forces that the sutures experienced during feeding, such as tension or compression, the researchers could determine how the skull roof likely deformed as the animals ate.

Living fish exhibit an incredible array of tooth and jaw shapes, suggesting that, ironically, direct analysis of fossil jaws would be a less precise means of determining the feeding methods of extinct species, Markey says. “Analysis of the sutures of the early amphibian species Acanthostega revealed that, while it had many adaptations to an aquatic lifestyle, it was more likely a biter than a sucker,” Markey says. “The analysis suggests that amphibians evolved a bite before emerging onto land as fully terrestrial animals.”

Science Daily
May 1, 2007

Original web page at Science Daily

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Poisonous, fast-breeding invaders: this particularly big toad, found this week, is a giant pest

Since cane toads were introduced to Australia in 1935, they have colonized 1.2 million square kilometres of that country — an area greater than that of France and Spain combined. But they might just be getting started, says an analysis that suggests they could double their current range. The toads’ spread seems to be partly due to their ability to adapt to survive in a broader range of climates. If that trend continues, then the area at risk from the toads could be even larger. “If they are evolving then our current predictions may be conservative,” says ecologist Mark Urban of the University of California, Santa Barbara. “In ten years, we may be presenting a greatly expanded model of suitable habitat.”

The cane toad (Bufo marinus) currently occupies a swathe of Australia’s tropical east and north, roughly from Brisbane to Darwin. This area is already larger than what was predicted based on the toad’s normal environment in its home range in South and Central America: it has moved into places both hotter and cooler than American toads can tolerate. To get an idea of how much further the toads might spread, Urban’s team divided the country into squares of approximately 2.7 square kilometres, looked at the climate in each square, and compared that with the areas already containing toads. The model suggested that about 2 million square kilometres of Australia is toad-friendly, they report in Proceedings of the Royal Society B1. The untapped habitat lies in temperate, coastal regions of western and southern Australia – around Perth and Adelaide, for example. That may seem a long way from where they are now, but the toads could get there, says Urban: “They have an uncanny ability to hide out in trucks and airplanes.”

Nature
April 17, 2007

Original web page at Nature

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Tadpoles use a proton pump to direct tissue regrowth

Tadpoles can achieve something that humans may only dream of: pull off a tadpole’s thick tail or a tiny developing leg, and it’ll grow right back — spinal cord, muscles, blood vessels and all. Now researchers have discovered the key regulator of the electrical signal that convinces Xenopus pollywogs to regenerate amputated tails. The results, reported this week in Development, give some researchers hope for new approaches to stimulating tissue regeneration in humans. Researchers have known for decades that an electrical current is created at the site of regenerating limbs. Furthermore, applying an external current speeds up the regeneration process, and drugs that block the current prevent regeneration. The electrical signals help to tell cells what type to grow into, how fast to grow, and where to position themselves in the new limb.

To investigate, Michael Levin and his colleagues at the Forsyth Center for Regenerative and Developmental Biology in Boston, Massachusetts, sorted through libraries of drug compounds to find ones that prevent tail regeneration but do not interfere with wound healing. One such drug, they found, blocks a molecular pump that transports protons across cell membranes; this kind of proton flow creates a current. Levin speculates that the current generated by this proton pump produces a long-range electric field that helps to direct what happens to nerve cells pouring into the site. “We can use this hydrogen pumping as a top-level master control to initiate the regeneration response,” says Levin. “We didn’t have to specifically say, ‘put a little muscle over here, a little muscle over there’.” The proton pump could also be used to turn on limb regeneration in older tadpoles that would normally have lost this ability. When Levin and his colleagues activated the proton pump during this older phase, tadpoles were more than four times more likely to regrow a perfectly formed tail than their normal counterparts.

The notion of regenerating complex organs from adult cells hasn’t always been popular, says David Stocum, director of the Indiana University Center for Regenerative Biology and Medicine in Indianapolis. “People used to pooh-pooh the idea,” says Stocum, “but now there’s renewed interest in it.” That interest has been primarily focused on the regenerative power of stem cells. But there is also some interest in direct regeneration from adult cells at the wound site. At first glance, dramatic limb and tail regenerations seem to be restricted to ‘simpler’ creatures, such as the humble planaria flatworm — chop it up into a hundred pieces and you’ll soon have a hundred little worms on your hands — and salamanders, which can grow back limbs, tails, jaws, intestines and some parts of their eyes and hearts.

But there are impressive examples of tissue regeneration in mammals as well. Male deer can grow the bone, skin, nerves and blood vessels of their antlers at a millimetre a day. Humans can regenerate livers, and many children under the age of seven have regrown amputated fingertips. And then there are the odd medical journal case studies of patients who have lost, say, a kidney, only to find years later that they’ve sprouted a new one. Changes in electrical current have been measured in regenerating fingertips, just as in a tadpole’s regenerating tail. But converting humans into fully functioning regenerators will probably take more than directing bioelectrical signals. The formation of scar tissue, for example, could inhibit regeneration in some cases, says David Gardiner, a biologist at the University of California, Irvine.

But the complex networks needed to construct a complicated organ or appendages re already genetically encoded in all of our cells — we needed them to develop those organs in the first place. “The question is: how do you turn them back on?” Levin says. “When you know the language that these cells use to tell each other what to do, you’re a short step away from getting them to do that after an injury.” The simplicity of the regeneration start signal is promising, says Stocum: it is just possible that a properly tuned electric signal is all humans need to jumpstart tissue regeneration.

Nature
March 20, 2007

Original web page at Nature

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Light-activated compound silences nerves, may one day help

Brain activity has been compared to a light bulb turning on in the head. Scientists at Washington University School of Medicine in St. Louis have reversed this notion, creating a drug that stops brain activity when a light shines on it. The unexpected result, reported online in Nature Neuroscience, turned several lights on in researchers’ heads. “This is daydreaming at this point, but we might one day combine this drug with a small implanted light to stop seizures,” says senior author Steven Mennerick, Ph.D. associate professor of psychiatry and of anatomy and neurobiology. “Some current experimental epilepsy treatments involve the implanting of an electrode, so why not a light?”

The new compound activates the same receptor used by many anesthetics and tranquilizers, making it harder for a brain cell to respond to stimulation. Mennerick and colleagues including lead author Larry Eisenman, M.D., Ph.D., assistant professor of neurology, tested the drug on cells in culture set up to behave like they were involved in a seizure, with the cells rapidly and repeatedly firing. When they added the new drug and shone a light on the cells, the seizure-like firing pattern calmed. If the drug is adapted for epilepsy, Mennerick notes, it is most likely to help in cases where seizures consistently originate from the same brain region. Theoretically, doctors could keep a patient on regular doses of the new drug and implant a small fiber optic light in the dysfunctional region. The light would activate the drug only when seizure-like firing patterns started to appear.

Scientists in the laboratory of Douglas F. Covey, Ph.D., professor of molecular biology and pharmacology, created the drug by linking a steroid known to have anesthetic effects with a molecule, known as NBD, that fluoresces in response to blue light. Mennerick and colleagues were hoping to use the new compound, which they call the NBD-steroid, to trace the steroid’s path in the nervous system. To their initial disappointment, the researchers found that adding the fluorescent tag to the steroid had disabled it. “Normally, the steroid keeps the cell quiet in the face of stimuli that would otherwise cause it to fire,” Mennerick says. “That’s why drugs like barbiturates and Valium, which act on the same receptor as the steroid, are sedatives–they quiet the nerve system down.” When dosed with NBD-steroid, nerve cells still responded to stimuli as readily as they had prior to exposure. Just to see where the modified steroid was going, though, researchers exposed the cells to light.

“All of a sudden, the response to the steroid was back, and the nerve cells were more reluctant to react to stimuli,” Mennerick says. “And we knew we had found something very interesting.” To confirm what was happening, scientists dosed two of a nerve cell’s many different branches with NBD-steroid. When they shone a light on one of the branches, its readiness to respond decreased, while the readiness of the branch not exposed to light remained the same. Department of Anesthesiology colleagues tested the compound’s effects on tadpoles. “Tadpoles rapidly take up drugs through their skin, so they’re frequently used to test potential anesthetics,” Mennerick notes. “And of course, given that it’s a photoactive drug, they make a nice test subject because they’re mostly translucent.”

Tadpoles swimming in a solution of NBD-steroid went to sleep at the bottom of their beaker when exposed to light. Mennerick and his colleagues are currently seeking to identify or create an animal model of epilepsy that lets them test the NBD-steroid’s potential as a therapeutic. They are also looking for a new fluorescent tag that responds to longer wavelengths of light. Unlike many photoactive compounds, the NBD-steroid responds not to ultraviolet light but to light from the blue region of the electromagnetic spectrum. This helps because the longer wavelengths of blue light penetrate farther into tissue than ultraviolet light and are less damaging to it. Molecules that fluoresce in response to even longer wavelengths of light are available, and scientists are testing whether any of them can create the same effect when bound to the steroid.

Science Daily
March 20, 2007

Original web page at Science Daily

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Scientists reveal molecular details of regeneration in amphibians

When a newt loses a limb, the limb regrows. What is more, a newt can also completely repair damage to its heart. Scientists at the Max Planck Institute for Heart and Lung Research in Bad Nauheim have now started to decode the cellular mechanisms in this impressive ability to regenerate and have discovered the remarkable plasticity of newt heart cells. As mammals, and therefore also humans, do not have this ability, the findings could contribute to new cell therapies for patients with damaged organs (Journal of Cell Science, 2006). The red-spotted newt, Notophthalmus viridescens, is a favourite animal of the researchers working with Thomas Braun in Nauheim. This amphibian comes from the wetlands of North America, but it also feels quite at home in the Institute’s aquaria. It is a small animal that scientists find interesting for a particular reason: whereas humans cannot regenerate damaged heart muscle adequately after a heart attack and the destroyed muscle tissue scars over instead, following damage, a newt’s heart can be completely repaired and the organ’s function can be completely restored.

The key to this ability to regenerate are the heart muscle cells themselves. When a newt’s heart sustains damage, its cells can lose their characteristic properties; they can dedifferentiate. The researchers were able to show that proteins typical of heart muscle cells – the heavy myosin chain and various troponins – were dramatically down-regulated in this process. At the same time, the cells embark on massive cell division to build up new heart muscle. It takes around two weeks for the heart function to be restored in the newt. The data shows that at this point the expression of the muscle-specific proteins is again normal, i.e. the cells have differentiated again, and have regained their characteristic properties. The researchers isolated the heart muscle cells and cultured them. In most of the cells, Braun and his colleagues were able to demonstrate the existence of a protein called Phospho-H3. This protein is a marker for the G2 phase of the cell cycle and indicates that the newt heart regenerates without the involvement of stem cells. It also seems that the heart regeneration does not create typical wound healing tissue, called a blastema. Braun explains this finding: “The heart only has a relatively small number of different cell types. This could be a reason why the regeneration of heart tissue does not require a blastema.” The researchers in Bad Nauheim found no indication that stem cells were involved in repairing newt hearts.

The process of regenerating lost extremities is different. Unlike in the process with the heart, newts develop a blastema in this case. Blastema cells have certain characteristics in common with stem cells, such as the development into different cell types. The cell biologists in Bad Nauheim injected isolated heart muscle cells into a newt’s leg that was regrowing after amputation. In this environment, the cells began to de-differentiate, as they did in the heart. However, this did not happen when they were injected into an undamaged extremity. Again, the researchers registered the very rapid loss of heart muscle-specific proteins. “We suspect that the signal for the de-differentiation comes from the area where the wound is healing and the cells communicate with each other,” explains Braun. These signals could be transmitted via certain enzymes, for example. An enzyme of this nature – focal adhesion kinase -, which plays a part in the transmission of signals in the cells, is phosphorylated in the transplanted cells and is thus active. The Max Planck researchers in Bad Nauheim hope that better understanding of the molecular issues involved in regeneration in the newt will open up new possibilities for the repairing human patients’ damaged hearts.

Science Daily
December 19, 2006

Original web page at Science Daily

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“Frog hotel” to shelter Panama species from lethal fungus

For the past two years the Panamanian biologist has been watching as a lethal fungus spread across Central America, wiping out entire populations of frogs. The Batrachochytrium dendrobatidis (BD) fungus is so deadly that within six months of arrival in a given country, about half of all amphibian species disappear and overall populations are reduced by 80 percent. In March Griffith discovered the first evidence that the disease had arrived in the El Valle region of Panama, frog-rich mountains about 90 minutes southwest of Panama City. Dead frogs, including the golden frog—a symbol of good luck in Panama—have been found scattered throughout the area. So researchers have implemented an unusual rescue plan: creating a fungus-free “frog hotel.”

Dozens of scientists volunteered to fly to Panama and tromp through the swampy forest at night to capture male and female members of every possible frog species. Now about 300 amphibians representing more than 20 species are being housed at the Hotel Campestre in El Valle, where the animals are treated to daily cage cleaning and hand-captured insect meals. Central America is particularly susceptible to the BD fungus. In Panama, for example, an estimated 40 species of frogs are already reaching critically low populations. At-risk varieties include translucent-skinned glass frogs and the iconic golden frog, with its bright orange skin and black leopard-like markings. Scientists tracking the spread of BD have reported seeing infected frogs with muted reflexes and their skin falling off. “You can’t overstate how serious this pathogen is—it is the worst infectious disease ever recorded among vertebrates,” said Mathew Fisher of the department of infectious disease epidemiology at the U.K.’s Imperial College London.

National Geographic
November 21, 2006

Original web page at National Geographic

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Study challenges belief that tree frogs depress metabolic rate after ‘waxing’ themselves

In a fascinating new study from the November/December 2006 issue of Physiological and Biochemical Zoology, researchers from the University of Florida explore wiping behaviours in a tree frog that waxes itself, and test whether these frogs become dormant to conserve energy during dehydration. Many amphibians have skin that offers little resistance to evaporative water loss. To compensate, these and some other arboreal frogs secrete lipids and then use an elaborate series of wiping motions to rub the waxy secretions over their entire bodies. This self-wiping is a complex behaviour involving the use of all four limbs to stroke or rub all dorsal and ventral body surfaces, including the limbs,” explains Nadia A. Gomez (University of Florida, Gainesville) and her coauthors. They continue: “Thus, the animal is protected from dehydration, provided the external film of lipids is not physically disrupted by movements or other disturbance.”

Tree frogs characteristically go into a resting posture after wiping themselves, tucking their limbs tightly against or beneath their body and closing their eyes. The researchers found that this series of actions following “waxing” allows tree frogs (Phyllomedusa hypochondrialis) to limit rates of surface evaporation to as little as 4 percent of that from a free water surface in the same environment. To examine the question of dormancy, the researchers found that waxed and inactive frogs had about the same metabolic rate as unwaxed, dehydrating frogs. This suggests that waxed frogs are not in a hibernation-like dormant state, as was previously thought. (Some frogs, however, showed moderate reductions of metabolic rate as dehydration advanced, suggesting that they might become dormant during, for example, a prolonged drought.) “Our data do not provide strong evidence that P. hypochondrialis routinely depress metabolic rates and enter a deep dormant state during quiescent behaviours following wiping,” explain the authors. “Moreover, quiescent Phyllomedusa remain responsive to [the] presence of insects and eat readily.”

Science Daily
November 21, 2006

Original web page at Science Daily

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Frogs’ legs are their undoing

North American bullfrogs are helping to wipe out their European relatives, albeit unwittingly. Worldwide trade in the live frogs for their legs seems to be spreading a lethal fungal infection. It has already killed off amphibians in Australia and South America. Now it’s sweeping the Mediterranean basin. A quarter of amphibians that live around this biodiversity hotspot are under threat of extinction, according the World Conservation Union’s latest regional Red List. Over half of the basin’s 106 frogs, toads and salamanders are unique and one, the painted frog, is now officially extinct. Worldwide, almost one-third of the world’s 5918 amphibians are now threatened with extinction.

As elsewhere, disappearing wetlands and pollution of what remains are the main culprits behind the animals’ demise. European amphibians, though, are also besieged by the chytridiomycosis fungal disease that is sweeping the world. It could now hasten the end of Europe’s midwife toad, famed for carrying its eggs until they hatch, and the fire salamander, which Aristotle erroneously believed could resist flames. The region’s 355 reptiles fare only slightly better. Forty-six species face extinction, and some whole groups are in bad shape. Two of the Mediterranean’s five land tortoises are critically endangered, while snakes, in addition to losing their habitat, are being persecuted by people and run over by cars.

New Scientist
October 10, 2006

Original web page at New Scientist

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Study shows frogs can play key role in stem cell research

It sounds like one of those curiosities which pops up in wildlife documentaries, but the African clawed frog could prove a powerful ally for scientists working in the key area of stem cell research. Researchers at the University of Edinburgh have discovered that the distinctive species — which has become popular in recent years as a domestic pet — shares with humans the same genetic mechanism that enables embryonic stem cells to divide without limit. This process, which gives embryonic stem cells the capacity to become any of the 200 cell types in the body, is fundamental to all research in the discipline.

Until now, stem cells have been obtained from mice, primates and humans, but never from amphibians. But, because the African clawed frog is easier to study than mice and humans, the Edinburgh team anticipate that it will become an important research tool in their quest to understand and, ultimately, treat disease using stem cells. The results of their study are published in the current edition of the journal Development. The key protein in humans, called Oct4, which governs the process of unlimited division of stem cells, has an equivalent in the African clawed frog, called PouV. This new research shows that the two proteins are not only similar, but perform the same function — both bind to DNA and activate certain genes that keep stem cells dividing. Indeed, embryonic stem cells lacking the Oct4 protein stop dividing and become specialised.

In the study, Dr Gillian Morrison introduced frog PouV proteins into mouse embryonic stem cells lacking Oct4 and found that the frog proteins “rescued” the stem cells — in other words, the cells recovered their ability to divide without limit. Dr Morrison obtained similar effects when she introduced PouV proteins from another amphibian, the axolotl (a type of salamander). To find out exactly what function PouV proteins perform in frog embryos, Dr Morrison injected special compounds into very young embryos, to inactivate the native PouV proteins. These embryos continued to grow, but had defective heads and tails.

When the scientists looked closely at these embryos, they found that cells had become specialised before they were supposed to — before the embryo was ready for them. Consequently, the structures they make are severely affected. This suggests that the PouV proteins are holding the cells in an uncommitted state, waiting for the time to come when they will decide what type of cell they are going to be. This is probably what Oct4 is doing in mouse and human embryonic stem cells.

The findings are also interesting because they highlight that the remarkable capacity of embryonic stem cells to divide without limit is at least 300 million years old. “It was very exciting, and humbling, to find that the proteins from such an ancient animal such as the frog can rescue the behaviour of ‘modern’ mouse embryonic stem cells. It told us so much about where this behaviour comes from, and how long ago,” said Dr Morrison. Dr Josh Brickman, group leader at the Institute for Stem Cell research said: “Our results show that mammals have adopted the function of the amphibian PouV proteins to maintain their embryonic stem cells. These features of dividing without limit and giving rise to many types of cell are thus ancient features of early embryonic cells, crucial for the correct development of both frogs and humans.”

Science Daily
June 6, 2006

Original web page at Science Daily

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How embryos differentiate left from right

Researchers at the Forsyth Institute have discovered a new mechanism responsible for early left/right patterning, the process by which organs locate themselves on the left or right side of the body. The discovery of this novel mechanism, garnered through the study of three different vertebrates (frogs, chickens and zebrafish), marks the first time that a single common mechanism has been identified in left-right patterning in three distinct species. Such a discovery may have far-reaching implications for the understanding of craniofacial development, right-left hand preference, right/left brain dominance and a variety of birth defects in humans.

A team of Forsyth Institute scientists, led by Michael Levin, PhD, Director of the Forsyth Center for Regenerative and Developmental Biology, examined the molecular and genetic factors that control left/right asymmetry and identified a novel component: an ion transporter that creates strong natural voltage gradients and pH changes.
The pump that normally acidifies subcellular compartments was shown to control embryonic laterality at very early stages. Their findings further challenged the previously held hypothesis that cilia (short hair-like structures on a cell) were the primary agents allowing an embryo to correctly position its internal organs along the left-right axis. Instead, their research showed a single asymmetry mechanism linking ciliary, serotonergic (serotonin is the chemical substance involved in transmitting signals between neurons), and ion flow mechanisms. The data was strengthened by the operation of this mechanism through all three vertebrates. This is important because prior data was very fragmented and different asymmetry-controlling systems appeared to be operating in frog/chick embryos vs. human/mouse/zebrafish embryos.

“In our previous research we showed that this developmental event happens earlier than expected in frogs by identifying an ion transporter that generates natural bioelectrical signals that ultimately control gene expression and the position of the heart and visceral organs,” Levin said. “We have now identified and explored an additional component of this novel mechanism – a protein pump that generates voltage and pH gradients. For the first time, we have a glimpse of how three different vertebrates utilize such ion flows in concert with ciliary movement and the function of pre-nervous neurotransmitters.”

The findings, to be published in the May 1 issue of Development (available online on April 18th) are key for understanding human development. According to Dr. Levin, this work shows a unified model for understanding embryonic development, and is therefore likely to provide important insight into human development. “Biased left-right asymmetry is both a fascinating and medically important phenomenon,” said Levin. “Problems with left/right asymmetry are responsible for a wide-range of birth defects in humans including conditions that affect the heart, the digestive system, the lungs and the brain. Building on our earlier research, we are gaining a significant understanding of asymmetry and getting closer to understanding its impact on humans. This fascinating ion pump has additional roles during development that are a goldmine of novel cellular control mechanisms.”

Dr. Levin’s team looked at molecular genetic and physiological characterization of a novel, early, biophysical event that is crucial for correct asymmetry: the flow of hydrogen ion or H+ flux. A pharmacological screen implicated the H+-pump H+-V-ATPase in Xenopus (frog) embryo asymmetry, where it directs left- and right-sided gene expression. The cell cytoskeleton is responsible for the LR-asymmetric localization of this pump during the first few cell cleavages in frog embryos. H+-flux across plasma membranes is thus asymmetric at the four- and eight-cell stages, and this asymmetry requires H+-V-ATPase activity. Artificially equalizing the asymmetry in H+ flux, by increasing or decreasing it on both sides equally, both randomized the location of the viscera without causing any other defects. To understand the mechanism of action of H+-V-ATPase, researchers isolated its two physiological functions, cytoplasmic pH and membrane voltage gradient (Vmem) regulation. Varying either pH or Vmem, independently of direct manipulation of H+-V-ATPase, caused disruptions of the normal LR pattern, suggesting important roles for both physiological parameters. V-ATPase inhibition also abolished the normal localization of serotonin at the 16-cell stage, suggesting that it helps to regulate the early flow of this important neurotransmitter. These data implicate H+-V-ATPase activity in patterning the left right axis of three different vertebrates, reveal mechanisms both upstream and downstream of its activity, and identify a novel role for this important ion transporter. Based on these observations, they proposed a detailed pH- and Vmem-dependent model of the early physiology of left/right patterning.

Michael Levin, PhD. is an Associate Member of the Staff in The Forsyth Institute Department of Cytokine Biology and the Director of the Forsyth Center for Regenerative and Developmental Biology, http://www.cellregeneration.org/. Through experimental approaches and mathematical modeling, Dr. Levin and his team examine the processes governing large-scale pattern formation and biological information storage during animal embryogenesis. The lab’s investigations are directed toward understanding the mechanisms of signaling between cells and tissues that allows a living system to reliably generate and maintain a complex morphology. The Levin team studies these processes in the context of embryonic development and regeneration, with a particular focus on the biophysics of cell behavior.

Science Daily
May 9, 2006

Original web page at Science Daily

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New fossil find in New Mexico named after artist Georgia O’Keeffe

Two Columbia scientists have discovered the fossil of a toothless crocodile relative that looks like a six-foot-long, two-legged dinosaur, but is actually a distant cousin of today’s alligators and crocodiles.Two Columbia scientists have discovered the fossil of a toothless crocodile relative that looks like a six-foot-long, two-legged dinosaur, but is actually a distant cousin of today’s alligators and crocodiles. Adjunct professor of earth and environmental sciences Mark Norell and his graduate student Sterling Nesbitt, both of whom also work as paleontologists at the American Museum of Natural History, have named the fossil Effigia okeeffeae. Effigia means “ghost,” referring to the decades that the fossil remained hidden from science. The species name, okeeffeae, honors the artist Georgia O’Keeffe, who lived near the site in northern New Mexico where the fossil was found. The discovery was announced last month in a technical paper in The Proceedings of the Royal Society and covered in the The New York Times.

Scientists say Effigia is a striking example of “convergence,” when two lineages evolve the same body plan. “It is astounding to see so many advanced dinosaur features in an animal so closely related to modern crocodiles, Norell said. Obviously, this group of crocodiles and dinosaurs must have had similar habitats and probably fed in the same way, accounting for the similarities of the limbs and skull.” Other examples of convergence include marsupial mammals related to kangaroos and opossums that evolved into creatures resembling lions and wolves. The features of Effigia okeeffeae also were unexpected. “It has large eyes, a beak, it walked on two feet and had small hands,” Nesbitt said.

Science Daily
March 14, 2006

Original web page at Science Daily

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Pesticides that seem harmless on their own can have severe effects on frogs when in combination

Pesticides used by US corn growers are combining to kill off the country’s native frogs. Research shows that commonly used pesticides, fairly harmless by themselves, are mixing to create a toxic soup in runoff water. This stunts the frogs’ sexual development and leaves them susceptible to fatal infections. Environmental toxicologists led by Tyrone Hayes of the University of California, Berkeley, have spent the past four years surveying the effects of pest-control chemicals on frogs that live in the US corn belt in the Midwest. The team raised northern leopard frogs (Rana pipiens) in water containing a combination of four weed killers, two fungicides and three insecticides, and examined the effect on their growth. Global amphibian declines are the result of multiple assaults on their environment.

“The nine-compound mixture represents that applied to the field at the time that eggs are laid in water that runs off the field,” Hayes says. The cumulative effect of the nine chemicals was greater than the sum of their individual properties, the researchers found. When tested at concentrations of 0.1 parts per billion (ppb), six of the compounds had no effect at all, two had small but noticeable effects on development, and one – atrazine – caused serious developmental problems, but not death. Yet all together, the combination killed 35% of frogs, and lengthened the time taken to develop from tadpole to adult by 15 days, or 25%. The researchers suspect that the mixture stimulates production of stress hormones, which retard a frog’s development. They publish their results on the website of the journal Environmental Health Perspectives.

Concentrations of 0.1 ppb are the lowest levels found in runoff water from cornfields during the summer, when frogs are growing and breeding. Concentrations can reach as much as 10 ppb, says Hayes. For atrazine, concentrations of 0.1 ppb can be quite harmful, causing male African clawed frogs (Xenopus laevis) to grow ‘feminine’ gonads and show stunted growth of the larynx. Hayes has previously demonstrated this in both wild and lab frogs; some of his new work shows that just a week of atrazine exposure is enough to cause the effect. But only the combination of all the pesticides seems to cause crippling developmental problems and death.

A delay in reaching adulthood may mean that ponds and puddles may dry out before frogs get the chance to reproduce, Hayes fears. And immune suppression may mean that they fall prey to otherwise benign infections. Pesticides are just one of several reasons why amphibian populations are declining worldwide, Hayes says. “Global amphibian declines are the result of multiple assaults on their environment.” Other potential threats to frogs and toads include increases in ultraviolet radiation from the sun, climate change, draining of wetlands, and emerging diseases. Pesticide exposure may increase the damage done by these factors, Hayes suspects.

“Many ’emerging diseases’ and deformities associated with infections may have bigger impacts in pesticide-exposed populations,” he says. “Other researchers have shown similar effects, but not at concentrations as low as we used here.” A ban on atrazine was this year extended to encompass the entire European Union, but the chemical is still licensed in the United States. “I cannot predict whether it will be banned,” says Hayes. “The industry is fighting hard to keep it on the market.”

Source: University of California, Berkeley

Nature
February 28, 2006

Original web page at Nature

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Picky female frogs drive evolution of new species in less than 8,000 years

Picky female frogs in a tiny rainforest outpost of Australia have driven the evolution of a new species in 8,000 years or less, according to scientists from the University of Queensland, the University of California, Berkeley, and the Queensland Parks and Wildlife Service. When isolated populations of the green-eyed tree frog (gray and brown) met again 8,000 years ago, they found that each had changed in subtle ways. The calls of the male frogs were different, and more importantly, hybrid offspring were less viable. One population that was cut off from its southern kin (pink) found a way to ensure healthy young. Females, who choose mates based only on their call, began selecting mates with the southern call type. Over thousands of years, this behavior exaggerated the pre-existing differences in call, lead to smaller body size in males of the “isolated southern population” and resulted in rapid speciation between the two populations of the southern lineage (pink and brown). That’s lightning-fast,” said co-author Craig Moritz, professor of integrative biology at UC Berkeley and director of the Museum of Vertebrate Zoology. “To find a recently evolved species like this is exceptional, at least in my experience.”

The yet-to-be- named species arose after two isolated populations of the green-eyed tree frog reestablished contact less than 8,000 years ago and found that their hybrid offspring were less viable. To avoid hybridizing with the wrong frogs and ensure healthy offspring, one group of females preferentially chose mates from their own lineage. Over several thousand years, this behavior created a reproductively isolated population – essentially a new species – that is unable to mate with either of the original frog populations.

This example suggests that rapid speciation is often driven by recontact between long-isolated populations, Moritz said. Random drift between isolated populations can produce small variations over millions of years, whereas recontact can amplify the difference over several thousands of years to generate a distinct species. “The overarching question is: Why are there so many species in the tropics?” Moritz said. “This work has led me to think that the reason is complex topography with lots of valleys and steep slopes, where you have species meeting in lots of little pockets, so that you get all these independent evolutionary experiments going on. Perhaps that helps explain why places like the Andes are so extraordinarily diverse.” Because of geographic isolation that began between 1 and 2 million years ago with the retreat of rainforest to higher elevations, two separate frog lineages developed in the northern and southern parts of the species’ coastal range – only to be reconnected less than 8,000 years ago as the climate got wetter and warmer and the rainforest expanded.

Hoskin and his colleagues found that the northern and southern calls of the male frog, which are what females pay attention to in the mating game, had become different from each other. Yet despite this difference, reflected in the call’s duration, note rate and dominant frequency, the two lineages could still breed with one another. The southern females, however, were more picky about their mates than the northern females. And in one area of contact that had become isolated from the southern range, the southern females were extremely picky, to the extent that they almost never mated with northern males.

In laboratory breeding experiments, the biologists discovered the reason for this choosiness: While northern and southern lineages could breed successfully, they apparently had diverged enough during their million-year separation that offspring of southern females and northern males failed to develop beyond the tadpole stage. Though crosses involving northern females and southern males successfully produced frogs, the offspring developed more slowly than the offspring of pairs of northern frogs. Field studies confirmed the laboratory results. Researchers could find no hybrid frogs in the contact zones that were the offspring of southern mothers, judging by the absence of any southern mitochondrial DNA, which is contributed only by the mother.

Hoskin and colleagues argue that because southern females have the most to lose in such cross-breeding, there may have been selection pressure to evolve a mating strategy to minimize dead-end mating with northern males. This appears to have occurred in the contact region where a population of the southern lineage had become isolated from the rest of its lineage and had developed a preference for certain male calls. The male frog call in this population has diverged significantly from both the northern and southern lineage calls. “If females have a reason not to get the mating wrong, and they have some way of telling the males apart – the call – the theory is that this should create evolutionary pressure for the female choice to evolve so that they pick the right males,” Moritz said.

This so-called reinforcement has been controversial since the time of Charles Darwin, with some biologists claiming that it requires too many steps for evolution to get it right. “Some have argued that it’s just too complicated and that it is not really necessary, and there have been few convincing demonstrations. In their view, differences between populations arise because of natural selection or genetic drift or mutation or some combination of those three, and reproductive isolation is just some glorious accident that arises from that,” Moritz said. “We do have very compelling evidence. We have addressed various lines of evidence and conclude that there has been reinforcement and that has given rise to a new species based on very strong female choice.” As a comparison, they looked at a second contact zone on the border between north and south, where frogs were not isolated from either lineage.

“Reinforcement does not appear to occur at the more ‘classic’ contact between northern and southern lineages, and we speculate that this may be due to gene flow from the extensive range of the southern lineage into the contact zone,” Hoskin said. “This problem does not exist at the other contact because the southern lineage population is very small and occurs primarily within the contact zone.” Because the frogs in the isolated contact area had a distinctively different call, and because they were effectively isolated from surrounding populations by mating preference, Hoskin and colleagues concluded that female choice led to this new species. Interestingly, evolutionary theory would predict that the southern and northern frog populations would drift apart into two distinct species. In the case of the green-eyed tree frog, Moritz said, a subpopulation of the southern species drifted away not only from the northern species, but also from the southern. That was unexpected, he said.

Moritz noted that geographic isolation in this “dinky bit of rainforest in Australia” has split many species, and that reinforcement at zones of recontact may be generating other new species. “In this tropical system, we have had long periods of isolation between populations, and each one, when they come back together, has got a separate evolutionary experiment going on. And some of those pan out and some don’t. But if they head off in different directions, the products themselves can be new species. And I think that’s kinda cool. It gives us a mechanism for very rapid speciation.”.

Science Daily
December 6, 2005

Original web page at Science Daily