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* Plastic in 99 percent of seabirds by 2050

Researchers from CSIRO and Imperial College London have assessed how widespread the threat of plastic is for the world’s seabirds, including albatrosses, shearwaters and penguins, and found the majority of seabird species have plastic in their gut.

The study, led by Dr Chris Wilcox with co-authors Dr Denise Hardesty and Dr Erik van Sebille and published today in the journal PNAS, found that nearly 60 per cent of all seabird species have plastic in their gut. Based on analysis of published studies since the early 1960s, the researchers found that plastic is increasingly common in seabird’s stomachs. In 1960, plastic was found in the stomach of less than 5 per cent of individual seabirds, rising to 80 per cent by 2010.

The researchers predict that plastic ingestion will affect 99 per cent of the world’s seabird species by 2050, based on current trends. The scientists estimate that 90 per cent of all seabirds alive today have eaten plastic of some kind. This includes bags, bottle caps, and plastic fibres from synthetic clothes, which have washed out into the ocean from urban rivers, sewers and waste deposits.

Birds mistake the brightly coloured items for food, or swallow them by accident, and this causes gut impaction, weight loss and sometimes even death. “For the first time, we have a global prediction of how wide-reaching plastic impacts may be on marine species — and the results are striking,” senior research scientist at CSIRO Oceans and Atmosphere Dr Wilcox said.

“We predict, using historical observations, that 90 per cent of individual seabirds have eaten plastic. This is a huge amount and really points to the ubiquity of plastic pollution.” Dr Denise Hardesty from CSIRO Oceans and Atmosphere said seabirds were excellent indicators of ecosystem health.

“Finding such widespread estimates of plastic in seabirds is borne out by some of the fieldwork we’ve carried out where I’ve found nearly 200 pieces of plastic in a single seabird,” Dr Hardesty said.

The researchers found plastics will have the greatest impact on wildlife where they gather in the Southern Ocean, in a band around the southern edges of Australia, South Africa and South America. Dr van Sebille, from the Grantham Institute at Imperial College London, said the plastics had the most devastating impact in the areas where there was the greatest diversity of species. “We are very concerned about species such as penguins and giant albatrosses, which live in these areas,” Erik van Sebille said. “While the infamous garbage patches in the middle of the oceans have strikingly high densities of plastic, very few animals live here.

Dr Hardesty said there was still the opportunity to change the impact plastic had on seabirds.

“Improving waste management can reduce the threat plastic is posing to marine wildlife,” she said. “Even simple measures can make a difference. Efforts to reduce plastics losses into the environment in Europe resulted in measureable changes in plastic in seabird stomachs with less than a decade, which suggests that improvements in basic waste management can reduce plastic in the environment in a really short time.

The work was carried out as part of a national marine debris project supported by CSIRO and Shell’s Social investment program as well as the marine debris working group at the National Center for Ecological Analysis and Synthesis, University of California, Santa Barbara, with support from Ocean Conservancy.

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Way for eagles and wind turbines to coexist

Collisions with wind turbines kill about 100 golden eagles a year in some locations, but a new study that maps both potential wind-power sites and nesting patterns of the birds reveals sweet spots, where potential for wind power is greatest with a lower threat to nesting eagles

Brad Fedy, a professor in the Faculty of Environment at the University of Waterloo, and Jason Tack, a PhD student at Colorado State University, took nesting data from a variety of areas across Wyoming, and created models using a suite of environmental variables and referenced them against areas with potential for wind development. The results of their research appear in PLOS ONE.

Increased mortalities threaten the future of long-lived species and, when a large bird like a golden eagle is killed by wind development, the turbine stops, causes temporary slowdowns and can result in fines to operators

“We can’t endanger animals and their habitats in making renewable energy projects happen,” said Professor Fedy, a researcher in Waterloo’s Department of Environment and Resource Studies. “Our work shows that it’s possible to guide development of sustainable energy projects, while having the least impact on wildlife populations.”

Golden eagles are large-ranging predators of conservation concern in the United States. With the right data, stakeholders can use the modelling techniques the researchers employed to reconcile other sustainable energy projects with ecological concerns.

“Golden eagles aren’t the only species affected by these energy projects, but they grab people’s imaginations,” said Professor Fedy. “We hope that our research better informs collaboration between the renewable energy industry and land management agencies.

An estimated 75 to 110 golden eagles die at a wind-power generation operation in Altamont, California each year. This figure represents about one eagle for every 8 megawatts of energy produced.

Professor Fedy’s map predictions cannot replace on-the-ground monitoring for potential risk of wind turbines on wildlife populations, though they provide industry and managers a useful framework to first assess potential development.

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http://www.sciencedaily.com/releases/2015/08/150827154417.htm  Original web page at Science Daily

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Could more intensive farming practices benefit tropical birds?

The world is facing an extinction crisis as more and more forests are converted into farmland. But does it help when farms share the land with birds and other animals? The short answer is “no,” according to new evidence based on the diversity of bird species reported in the Cell Press journal Current Biology on September 3. If the goal is to preserve more bird species, representing a greater span of evolutionary history, then it’s better to farm more intensively in some areas while leaving more blocks of land entirely alone. In other words, land-sparing wins out over land-sharing.

“I think the most surprising result is that species richness within communities does not explain the loss of phylogenetic diversity under land-sharing,” says David Edwards of The University of Sheffield. “So even if farming at low intensity over a larger area retains the number of species present, those species are less evolutionarily distinct and thus preserve less phylogenetic diversity.”

Edwards and his colleagues examined this question of farming practices in the Chocó-Andes of Colombia, a global hotspot for birds, including many species that can’t be found anywhere else. It’s also a place where tropical cloudforest landscapes are threatened by widespread pastures for cattle.

“The Chocó-Andes are a hotspot of endemism and have been widely impacted by low-intensity farming, making this one of the most threatened faunas on Earth,” Edwards says. “It is vital to consider how best to farm here, but also to use this region as a model for how best to farm in other locations.”

The researchers sampled birds in three study areas, each containing contiguous forest and cattle farms. While they found many bird species living within low-intensity farmland communities, those areas showed a loss of more than 650 million years of evolutionary history in comparison to the forest.

Edwards and his colleagues then used landscape simulations to examine the outcomes of land-sharing versus land-sparing practices. Their analyses show that land-sharing becomes increasingly inferior to land-sparing as the distance from intact forest grows. Isolation from forest also leads to the loss of more evolutionarily distinct species from communities within land-sharing landscapes, which can be avoided with effective land-sparing.

Edwards’s team concludes that “land-sharing policies that promote the integration of small-scale wildlife-friendly habitats might be of limited benefit without the simultaneous protection of larger blocks of natural habitat, which is most likely to be achieved via land-sparing measures.”

There’s plenty of work to do in order to simultaneously protect natural habitats and boost farm yields. Sustainability initiatives for oil palm, soy, and other crops now take a land-sharing approach by requiring the protection of biodiversity within tropical farmland. “My feeling is that land-sparing-type approaches–such as biodiversity offsets, which can protect larger tracts of natural habitat–are gaining traction, but there is a long way to go for expansion of such policies writ large,” Edwards says.

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http://www.sciencedaily.com/releases/2015/09/150903131405.htm  Original web page at Science Daily

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Mimic woodpecker fools competing birds, but genetics expose its true identity

To look tougher, a weakling might shave their head and don a black leather jacket, combat boots and a scowl that tells the world, “don’t mess with me.” But this kind of masquerade isn’t limited to people. Researchers recently have revealed a timid South American woodpecker that evolved to assume the appearance of larger, tougher birds.

Visual mimicry lets the Helmeted Woodpecker (Dryocopus galeatus) live on the threatened Atlantic forest turf of two bigger birds — the Lineated Dryocopus lineatus and Robust (Campephilus robustus) woodpeckers — reducing the likelihood of being displaced in an area of foraging.

“Because of this, it has the advantage of foraging in the same areas as the birds it’s mimicking, with those birds not being aggressive to this smaller woodpecker,” said Mark Robbins, ornithology collection manager with the University of Kansas Biodiversity Institute.

Robbins is co-author of a forthcoming paper in The Auk: Ornithological Advances showing that the Helmeted Woodpecker not only has deceived competing woodpeckers but also a previous generation of ornithologists who misclassified the bird based on the appearance of its plumage.

“It’s very similar in pattern to these other woodpeckers,” Robbins said. “In the 1980s, a monograph called ‘Woodpeckers of the World’ used museum specimens to assume relationships, and that has misled ornithologists across the board. Looking only at plumage has misguided us again and again.”

One of Robbins’ initial suspicions that the Helmeted Woodpecker wasn’t a close relative of the Lineated Woodpecker came in 2010 at an international conference of ornithologists in São Paulo, Brazil.

“Some friends and I went off to see Brazilian birds in Atlantic Forest, and we really wanted to see Helmeted Woodpecker,” he said. “One morning everyone was eating breakfast, but I was out by a lagoon. I heard its call, and went flying back inside through the doors saying, “There’s a Helmeted Woodpecker!” So there was mass rush out the doors, and we spent over an hour following this woodpecker. I was thinking, ‘I don’t think this is a Dryocopus‘ — and later thought it might be a member of the woodpecker genus.”

Next, Robbins teamed with two colleagues, KU alumnus Brett Benz of the American Museum of Natural History (lead author on the Auk paper) and Kevin Zimmer of the Los Angeles County Museum. They sought a deeper understanding of the Helmeted Woodpecker, so they conducted genetic analysis of the bird using state-of-the-art technology at KU and the AMNH.

The question was whether the Helmeted Woodpecker belonged in the genus Dryocopus, as the bird’s appearance would have it, or if a look at the woodpecker’s DNA would place it more appropriately in genus Celeus.

“Background genetic work on placement of this bird was performed using tissue from toe pads from specimens at the L.A. County museum that had been collected over 60 years ago,” Robbins said.

According to the authors, the results of the phylogenetic analyses “unequivocally” place the Helmeted Woodpecker within Celeus, showing the bird has matched its appearance with the “distantly related” Dryocopus lineatus with a “remarkable resemblance in plumage coloration and pattern.”

Robbins said the Helmeted Woodpecker’s smaller size and presumed submissive behavior are consistent with predictions derived from “evolutionary game theory” models and the “interspecific social dominance mimicry hypothesis.”

Without modern genetic analysis, the Helmeted Woodpecker’s evolutionary strategy of mimicking competing birds would have been hidden to science. “Only in last 15 years or so could this have been revealed,” Robbins said. However, Robbins said that intense farming within the threatened Atlantic Forest habitat of the Helmeted Woodpecker has put survival of the species into question. He hopes the discovery of the bird’s cryptic mimicry can call attention to destruction of its South American habitat.

“It’s only found in southeastern Brazil, eastern Paraguay and extreme northern Argentina,” Robbins said. “Much of that forest is gone. It’s a biome that’s been particularly degraded, and this woodpecker had declined considerably due to deforestation of the Atlantic Forests. It’s threatened, has been misplaced phylogenetically and is mimicking bigger, more aggressive birds.”

According to the KU researcher, the deforestation is due to farming of soybeans and sunflowers. “There are some places in eastern Paraguay where this bird once lived in Atlantic Forest where now it looks more like Kansas,” Robbins said.

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http://www.sciencedaily.com/releases/2015/08/150825125803.htm  Original web page at Science Daily

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Even cockatoos draw conclusions

It can be challenging to develop a task setup to test inference by exclusion that can be applied in similar way to different species. One of the problems of previous studies was to exclude the possibility that animals chose a novel stimuli simply out of curiosity rather than by the exclusion of known negative stimuli. The use of the touchscreen presents a controlled setting to test cognitive capacities in animals and has already successfully been used in a number of species.

Goffin cockatoos are a highly curious Indonesian parrot species that have already proven to possess remarkable cognitive capacities. They possess high levels of ‘Neophilia’, which is the tendency of an individual to explore novel items and is believed to have evolved in species inhabiting islands, as there they might face fewer or no predators. In the current task, the Goffins had to learn to associate a picture with a reward that would be delivered automatically after they touched the picture on the touchscreen whereas the picture next to it would lead to no reward. During this training the unrewarded stimulus occasionally was replaced by novel, unknown stimuli. Only once the individuals chose reliably the positive stimulus over the negative or novel ones they were tested for their inference skills. This procedure ensured that the cockatoos would not choose novel pictures purely based on curiosity in the test.

In the following tests however, various combinations of novel and known pictures, which could be rewarded or unrewarded, were presented to the birds. Depending on how the individuals performed in this sequence of tests, allowed the researchers to tell apart other, strategies that may have used by the animals. “More than half of our cockatoos choose their pictures in a way that clearly indicates the ability of infer by exclusion about rewarded stimuli. However alternative strategies also play an important role in guided their choices,” says Mark O’Hara who developed this task together with his colleagues.

“Considering the cockatoos capacities in previous tasks we actually expected that they would show inferences by exclusion, but this was the first test if we could detect this ability with our new task. That we could show this sort of reasoning, together with other strategies so nicely, lets us hope that the method will be applicable to many species and ultimately might help us to understand something about the evolution of this ability” he adds.

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http://www.sciencedaily.com/releases/2015/08/150826102032.htm  Original web page at Science Daily

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New Caledonian crows show strong evidence of social learning

Among our greatest achievements as humans, some might say, is our cumulative technological culture — the tool-using acumen that is passed from one generation to the next. As the implements we use on a daily basis are modified and refined over time, they seem to evolve right along with us.

A similar observation might be made regarding the New Caledonian crow, an extremely smart corvid and the only non-human species hypothesized to possess its own cumulative technological culture. How the birds transmit knowledge to each other is the focus of a study by Corina Logan, a junior research fellow at UC Santa Barbara’s Sage Center for the Study of the Mind when she conducted her research. Currently, she is a Leverhulme Early Career Research Fellow in the Department of Zoology at the University of Cambridge.

“We don’t know whether the crows have cumulative technological culture, and one of the reasons is that we don’t know how they learn,” said Logan. “There’s a hypothesis that says in order for cumulative technological culture to occur you need to copy the actions of another individual. And we don’t know whether the crows are paying attention to the actions of others when they learn from someone else.”

But the crows have been observed using tools they’ve made out of long, narrow, palm-like Pandanus leaves. “It has a serrated edge, and they cut into one side of the leaf, then make another cut farther down and then rip off the part in between,” Logan explained. “It makes a tool they can use to dig grubs out of logs.”

Even more curious, according to Logan, the crows have been observed using tools made of the same material but in different shapes — wide, narrow and stepped, which might be more structurally sound. However, no one has been able to explain the geographic variation in tool shapes — all three shapes are seen at the south end of New Caledonia, while the stepped tool is more prevalent everywhere else.

“It’s thought that in order for tool shapes to be transmitted, one bird would have to watch another cutting the leaf and then mimic that bird’s actions,” Logan continued. “That would require imitation or emulation.”

So Logan devised a study to look at all the learning mechanisms — social and asocial — the crows employ when solving a foraging problem. To level the playing field so that those birds with more experience with one particular tool don’t have an advantage over the others, Logan gave them a novel non-tool task.

She designed the experiment based on apparatus used by University of Leeds zoologist Will Hoppitt in a similar study he conducted on meerkats. “I used two apparatuses with multiple access points on each,” she said, “so we could look at whether the crows were imitating or emulating, whether they were just paying attention to another crow’s general location or whether they were paying attention to a specific area on an apparatus that another crow was interacting with.”

Logan and colleagues found that the crows don’t imitate or copy actions at all. “So there goes that theory,” she said. “Assuming how they learn in a non-tool context carries over to a tool context, they wouldn’t copy the actions of individuals they see cutting up Pandanus leaves to make tools.”

But Logan and her team did strong evidence of social learning: If one crow sees a companion interacting with a particular area of the apparatus, reaching its bill through a door and pulling out a piece of boiled egg — the treat — the former is far more likely to try that particular door on either apparatus before choosing the other access options.

“It’s called stimulus enhancement,” she explained. “That’s the social learning mechanism they’re using. But there’s another interesting aspect: Once they see another bird interact with the door, they go to that door and then begin to solve the problem on their own. And now they completely ignore social information and they just use trial and error learning to open the door and extract the food.”

Even if one crow is at an apparatus and tries unsuccessfully to open the door, if he or she sees another crow on the second apparatus actually solving the problem correctly, the first crow doesn’t use that information. “The social learning attracts them to a particular object and then they solve it through trial and error learning after that,” Logan said.

“So we thought, ‘Okay, if they don’t imitate or emulate, how could they still have cumulative technological culture?'” she continued. Perhaps it’s a combination of social learning and trial and error. Consider the grub digging. “In the wild, juveniles live with or near their parents for the first year or so,” she explained. “The juveniles see their parents make and use a particular tool shape. And often the parent will leave the tool inside the hole in the log and the juveniles will grab it and start interacting with it.

Similar to the stimulus enhancement Logan and her team identified initially, the crow parents could draw their children’s attention to the tools to make them more likely to interact with the tools. In addition, wild juveniles appear to learn how to use the tool through trial and error over the course of several months.

“We’re suggesting it could be that they’re copying the end result of another crow’s action, but they’re not copying the actual actions of the other crows,” Logan continued. “It’s actually a form of emulation but it doesn’t involve the copying actions that were hypothesized previously.”

For this study, Logan placed the crows in small groups. One was a family that consisted of two parents and their two sons; another included two mated pairs that weren’t related; and the third was made up of an adult and five juveniles. One of the juveniles was likely the adult’s daughter but the rest were unrelated. It had been previously hypothesized that juveniles do most of the learning, with adults picking up very little, if anything, from the youngsters or from each other

It turns out this was mistaken. “It didn’t matter what group it was,” Logan said. “Everyone learned from everyone — juveniles from juveniles, adults from adults, juveniles from adults, adults from juveniles. It seems that if they have the opportunity, they’ll learn from anyone. But because they live in family groups, it seems to constrain who they have the opportunity to learn from in the wild.”

Logan plans to replicate the study with the great-tailed grackle, another highly intelligent bird. “They are expanding their range really rapidly,” she said. “There are many questions about how they learn to forage so successfully in new environments. Are they learning from other species about what to forage on when they encounter a new food type? Or are they exploring on their own, using their own information?”

According to Logan, studies such as this broaden our understanding of the nature of cumulative technological culture. If it can spread through other mechanisms, such as stimulus enhancement — simply drawing one’s attention to something and imprinting on a particular way of doing things — it could expand scientists’ ideas about where they should look for cumulative culture in general, and cumulative technological culture in particular.

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Shifting winds, ocean currents doubled endangered Galápagos penguin population

Shifts in trade winds and ocean currents powered a resurgence of endangered Galápagos penguins over the past 30 years, according to a new study. These changes enlarged a cold pool of water the penguins rely on for food and breeding — an expansion that could continue as the climate changes over the coming decades, the study’s authors said.

The Galápagos Islands, a chain of islands 1,000 kilometers (600 miles) west of mainland Ecuador, are home to the only penguins in the Northern Hemisphere. The 48-centimeter (19-inch) tall black and white Galápagos penguins landed on the endangered species list in 2000 after the population plummeted to only a few hundred individuals and are now considered the rarest penguins in the world.

Most of the penguins live on the archipelago’s westernmost islands, Isabela and Fernandina, where they feed on fish that live in a cold pool of water on the islands’ southwestern coasts. The cold pool is fed by an ocean current, the Equatorial Undercurrent, which flows toward the islands from the west. When the current runs into Isabela and Fernandina, water surges upward, bringing cold, nutrient-rich water to the surface.

New research suggests shifts in wind currents over the past three decades, possibly due to climate change and natural variability, have nudged the Equatorial Undercurrent north. The changing current expanded the nutrient-rich, cold water farther north along the coasts of the two islands, likely bolstering algae and fish numbers in the cold pool. This allowed the penguin population to double over the past 30 years, swelling to more than 1,000 birds by 2014, according to the new study.

Climate change could further shift wind patterns and ocean currents, expanding cold water further north along the coasts of Isabela and Fernandina and driving fish populations higher, according to the new study.

Penguins, as well as other animals like fur seals and marine iguanas that feed and reproduce near the cold waters, may increase in numbers as the northwestern coasts of the islands become more habitable, said the study’s authors. They noted that wind and ocean currents could also return to earlier conditions, leading to a decline in penguin populations.

“The penguins are the innocent bystanders experiencing feast or famine depending on what the Equatorial Undercurrent is doing from year to year,” said Kristopher Karnauskas, a climate scientist who performed the research while at Woods Hole Oceanographic Institution in Cape Cod, Massachusetts, and lead author of the new study recently accepted in Geophysical Research Letters, an American Geophysical Union journal.

The new findings could help inform conservation efforts to save the endangered penguins, said the study’s authors. Increasing efforts on the northern coasts of the islands and expanding marine-protected areas north to where the penguins are now feeding and breeding could support population growth, the study’s authors said.

Karnauskas notes that the vast majority of marine organisms will be negatively affected by the rise in ocean temperatures and acidification that are expected to occur across the globe as a result of climate change. “With climate change, there are a lot of new and increasing stresses on ecosystems, but biology sometimes surprises us,” said Karnauskas. “There might be places–little outposts–where ecosystems might thrive just by coincidence.”

The Galápagos penguin population tenuously hangs onto the islands that so enthralled Charles Darwin during his visit in 1835. The penguins once numbered around 2,000 individuals, but in the early 1980s a strong El Niño — a time when sea surface temperatures in the tropical Pacific are unusually warm — brought their numbers down to less than 500 birds. Dogs, cats and rats introduced to the islands also stymied the penguin population by attacking the birds, disturbing their nests, and introducing new diseases, according to previous research.

Despite these setbacks, the penguins gradually increased in number in the following decades, according to local bird counts. Researchers, interested by the increase in penguins, noted that the birds remained near the coldest stretches of water. Nearly all of the Galápagos penguins live on the western coasts of Isabela and Fernandina, and two-thirds of them huddled near the coldest waters at the southern tips of the islands, according to previous research.

The study’s authors wanted to know whether the growing numbers of penguins were related to local changes in ocean temperature. They combined previously-collected penguin population data from 1982 to 2014 with sea surface temperature data from satellites, ships and buoys for the same time period.

They found that the cold pool, where sea surface temperatures are below 22 degrees Celsius (71 degrees Fahrenheit), expanded 35 kilometers (22 miles) farther north than where it was located at the beginning of the study period. In the 1980s the cold water pocket reached only the southern halves of the western coasts of Isabela and Fernandina. By 2014, the cold water pocket extended across the entire western coasts of the islands.

A shift in trade winds and underwater ocean currents likely caused the Galápagos cold pool expansion, propose the authors. Trade winds blow surface ocean waters from the southern side of the equator to the northern side of the equator. As surface waters pile up in the north, the water at the bottom of the pile is squished south, nudging the Equatorial Undercurrent — a cold current that flows roughly 50 meters (160 feet) under the ocean surface — south of the equator.

Likely due to a combination of natural variation and human-caused climate change, trade winds west of the Galápagos slackened during the study period, lessening the pressure pushing the Equatorial Undercurrent south, according to the new study. Consequently, the ocean current gradually shifted north, increasing the amount of cold water coming to the Galápagos Islands, according to the study’s authors.

Satellite images showed that this expanded pool of cold water likely encouraged the growth of phytoplankton, according to the new study. This increase in ocean algae attracted fish to the area — the main entrée for Galápagos penguins, suggest the authors. The largest pulses of cold water reached the islands from July through December, coinciding with the penguins’ breeding season. The bountiful fish helped the birds successfully reproduce and feed their young, according to the new study.

Models indicate trade winds will continue to abate in the future as the climate warms, Karnauskas said. This could cause the undercurrent to continue to move north, expanding the Galápagos cold pool and possibly further raising penguin populations, he said. Other animal populations like the endangered Galápagos fur seal and the marine iguana also may profit from the prolific amount of food in the Galápagos cold pool, according to the study’s authors.

Wind and ocean currents could also possibly return to where they were in the 1980s, compressing the cold pool and possibly leading to a decline in penguins, Karnauskas added.

The new study shows how large-scale changes in the climate can act locally, said Michelle L’Heureux, a climate scientist with the National Oceanic and Atmospheric Administration’s Climate Prediction Center in College Park, Maryland, and not an author on the new paper. “While it is important that we focus on the big picture with climate change, it’s really the small scale that matters to the animals and plants that are impacted,” she said.

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http://www.sciencedaily.com/releases/2015/08/150803155108.htm  Original web page at Science Daily

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How the finch changes its tune

Like top musicians, songbirds train from a young age to weed out errors and trim variability from their songs, ultimately becoming consistent and reliable performers. But as with human musicians, even the best are not machines. To learn and improve, the songbird brain needs to shake up its tried-and-true patterns with a healthy dose of creative experimentation. Until now, no one has found a specific mechanism by which this could occur.

Now, researchers at UC San Francisco have discovered a neurological mechanism that could explain how songbirds’ neural creativity-generator lets them refine and alter their songs as adults. The finding could help explain how the human brain learns complex motor skills – from playing the oboe to driving a car – and may have long-term implications for treating neurological conditions ranging from Parkinson’s disease to obsessive disorders.

To learn its song, a bird uses a specialized portion of its brain equivalent to the human basal ganglia, a collection of neural structures nestled in the base of the brain. “This is an incredibly well conserved circuit – from lampreys to us – which in humans is connected to everything from movement to mood,” said lead author Hamish Mehaffey, PhD, a post-doctoral researcher in the lab of the late Allison Doupe, MD, PhD, a beloved professor of psychiatry and psychology at UCSF who passed away in October 2014.

In her 20 years at UCSF, Doupe established the birdsong system as a model for the basal ganglia’s role in human language, fine motor learning and psychiatric disease, said Michael Brainard, PhD, a UCSF professor of physiology who was both Doupe’s husband and a frequent collaborator.

“Her recent work had shown that precise patterns of activity arising from the basal ganglia were important for brain plasticity and learning, but we didn’t understand what aspects of that patterning were important,” Brainard said. “The current results demonstrate a mechanism that could explain why these activity patterns matter and reveal the ‘rules’ that let them alter brain connectivity. This is a key advance.”

Young male zebra finches spend their lives perfecting their boisterous mating song, which sounds a bit like a droid from Star Wars. Young birds learn by trial and error to produce an accurate cover of their father’s mating song, but as adults they are not above tweaking a phrase or two in their efforts to impress potential mates, or as needed to adjust their technique for growth, age or injury.

Doupe’s previous research revealed that the avian equivalent of the human basal ganglia plays a crucial role in the creative experimentation required for song learning. When researchers block the output of the basal ganglia, young birds never develop a mature song, and adults lose the ability to adjust and maintain their song based on experience.

Doupe’s work also found that the creativity engine of the basal ganglia is more active when birds practice their songs alone, injecting variability into the song motor circuit to let the birds try out new notes and modified motifs. But when a pretty female shows up, the researchers found, the creativity circuit shuts down to let the bird reliably produce the best, most tried-and-true version of its song. The basal ganglia also are needed to lock in any change to a new part of the song that the bird is practicing.

Researchers trying to understand how the basal ganglia’s instructive signals enable trial-and-error learning have been perplexed by their unpredictable timing. Unlike the brain region that acts as a conductor for the bird’s song, which issues bursts of activity precisely timed to initiate specific notes and motifs, the timing of the basal ganglia’s signals, when they chime in at all, is off-beat and hard to predict.

“On the one hand, if there’s no variability, there’s no trial-and-error learning,” said Mehaffey. “If the bird can’t explore, it will never find a better version of its song. On the other hand, this variability has confused a lot of us, because if the bird needs to modify a specific note’s pitch, the signal needs to be very precisely timed.

The new paper, which appeared online August 3, 2015 in the journal Nature Neuroscience, is the first to examine in detail the synapse-level learning rules that could allow the basal ganglia’s variable signals to modify the motor plan controlling the bird’s song.

Using brain slices containing the region where inputs from the basal ganglia and the song motor pathway converge to control the bird’s song performance, Mehaffey electrically stimulated the two pathways to show that the relative timing of their signals – one for “creativity” and the other encoding the established song – can lead to synaptic changes that either put the basal ganglia temporarily in the driver’s seat or hand the reins back to the learned motor plan.

Further research in live animals suggested that the same synaptic learning mechanism may be necessary for adult birds to modify their songs based on experience. The scientists exposed birds to an irritating burst of static tied to the pitch of a specific note in their songs. Typically, birds quickly learn to modify this note to avoid the burst of noise, but when the researchers gave the birds a drug that specifically blocks the timing-dependent plasticity mechanism in brain slices, the birds lost the ability to alter their song.

Mehaffey credits Doupe’s thorough knowledge of songbird behavior and neurology with the success of the experiments, which depended on using electrical stimulation patterns that mimicked the naturalistic patterns of activity observed in the bird brain during song.

“She deeply understood this system and encouraged her students and post-docs to pursue every imaginable method to examine what she thought was an important question,” Mehaffey said. “She was fearless in that regard.

Mehaffey and others in the Doupe lab are now working to learn how specific changes to the song are represented at the synaptic level and how a bird integrates these changes into its standard song. Understanding these questions has the potential to teach researchers how the basal ganglia and cortex interact in humans to produce fine motor learning, and how it malfunctions in disease. First-generation drugs for basal ganglia disorders have mainly involved shutting the whole thing down, Mehaffey said. “When it’s malfunctioning, you’re better off without it, and that goes for birds and humans,” he said. “But it would be nice to get to a point where we understand the system enough to start being able to actually go in and fix what’s broken.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/08/150803155354.htm Original web page at Science Daily

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Bird flies 16,000-kilometre Pacific circuit for no clear reason

Who actually enjoys long-haul flights? One seabird seems to – the ancient murrelet. It travels almost 8000 kilometres across the north Pacific, then does the whole slog again in reverse, for no obvious benefit. Most migrating birds travel long distances from north to south, or vice versa, to spend the harsher winter in warmer climates, often crossing the equator. Some travel from east to west, to areas where they can get more food.

But the ancient murrelet is unique, criss-crossing the Pacific to move between areas of similar climate. Some of them breed in western Canada and then winter in seas between Japan, China and Korea, before heading back to Canada – the only bird known to cross the full width of the North Pacific. The ancient murrelet is, Gaston says, a rather obscure and not well studied seabird. A member of the auk family, which also includes puffins and guillemots, it mainly breeds in the Haida Gwaii archipelago off the coast of British Columbia.

Gaston and his colleagues used geolocator tags to study the migration of ancient murrelets in 2013 and 2014. They managed to recover data from three of the geolocators and found that the birds had slowly crossed the North Pacific from July to November, travelling from Haida Gwaii to Japan. “I don’t know of any other bird that covers such a long distance from east to west,” says Gaston, “especially when it winds up in waters that are very similar to those it just left.”

Then in February, they set off back to Haida Gwaii, rapidly covering almost the whole distance within a month – the longest migration of any bird in the auk family. This is also twice as far as the longest cross-Atlantic migrations undertaken by Brünnich’s guillemot, which cover 70 degrees of latitude compared with murellets’ 105 degrees, Gaston’s team says. This means they travelled some 270 kilometres per day, probably flying 4 to 5 hours a day.

Gaston is not sure why their outward journey was slower, though he speculates it could be down to moulting hampering flight. There is no obvious reason for the birds to leave North American waters, which support many other seabirds over winter, for the equally temperate Japan. Genetic evidence suggests that the ancient murrelet originated from Asia and has only recently colonised North America, says Gaston. So the ancient murrelet could now be retracing the route by which the species colonised America from Asia. “There doesn’t seem to be any other suitable explanation,” Gaston says.

Journal reference: Ibis, DOI: 10.1111/ibi.12300

https://www.newscientist.com/  New Scientis

https://www.newscientist.com/article/dn28018-bird-flies-16000-kilometre-pacific-circuit-for-no-clear-reason/  Original web page at New Scientist

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* Kiwi bird genome sequenced

The kiwi, national symbol of New Zealand, gives insights into the evolution of nocturnal animals. Its unusual biological characteristics make the flightless kiwi a unique kind of bird. Researchers of the University of Leipzig and the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, have now sequenced the genetic code of this endangered species and have identified several sequence changes that underlie the kiwi’s adaptation to a nocturnal lifestyle: They found several genes involved in colour vision to be inactivated and the diversity of odorant receptors to be higher than in other birds — suggesting an increased reliance on their sense of smell rather than vision for foraging. The study was published in the journal Genome Biology.

Kiwi have a number of features that make them interesting for study: They only have rudimentary wings, no tail and a very long beak with nostrils. They are mainly nocturnal with a low basal metabolic rate and the lowest body temperature among birds. To date there has been little genetic information available for this species that might help scientists to understand their unusual biology better.

An international team led by Torsten Schöneberg of the Institute of Biochemistry of the Medical Faculty at the University of Leipzig and Janet Kelso of the Max Planck Institute for Evolutionary Anthropology have now sequenced the genome of the brown kiwi (Apteryx mantelli). Their analyses show genetic changes that likely reflect adaptation to nocturnal life. Although mutations have inactivated some of the key genes involved in colour vision, the number of odorant receptor genes is expanded suggesting that the kiwi sense of smell is highly developed. These changes happened about 35 million years ago which is after the kiwi’s arrival in New Zealand.

“Already French botanist and zoologist Jean Baptiste de Lamarck, who lived in the 18th century, hypothesized that evolution works in accordance with a ‘use it or lose it’ principle. It is therefore very likely that the kiwi lost its colour vision since this was no longer needed for its new nocturnal lifestyle,” says first author Diana Le Duc, MD, at the University of Leipzig. “The kiwi’s sense of smell — which was required for foraging in the dark of the night — became more acute and the repertoire of odorant receptors increased adapting to a wider diversity of smells.”

DNA analyses of two kiwi individuals show, however, that according to first estimates there is little genetic variability in the population. This could further endanger the survival of this species and will have to be taken into account when planning future breeding programs. “The genome of the kiwi is an important resource for future comparative analyses with other extinct and living flightless birds,” says computational biologist Janet Kelso of the Max Planck Institute for Evolutionary Anthropology.

The kiwi is the national symbol of New Zealand and belongs to a group of birds called ratites that also includes the extinguished New Zealand moa as well as flightless birds like ostrich, emu and rhea. Following human migration to New Zealand around 800 years ago, many of the local bird species became extinct. Despite intensive protection efforts the kiwi is highly endangered.

http://www.sciencedaily.com/ Science Daily

http://www.sciencedaily.com/releases/2015/07/150723083731.htm Original web page at Science Daily

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* Rapidly expanding range of highly pathogenic avian influenza viruses

The movement of highly pathogenic avian influenza (H5N8) virus across Eurasia and into North America and the virus’ propensity to reassort with co-circulating low pathogenicity viruses raise concerns among poultry producers, wildlife biologists, aviculturists, and public health personnel worldwide. Surveillance, modeling, and experimental research will provide the knowledge required for intelligent policy and management decisions.

The recent introduction of highly pathogenic avian influenza (HPAI) subtype H5N8 virus into Europe and North America poses major risks to poultry industries, zoologic collections, and wildlife populations; thus, this introduction warrants continued and heightened vigilance. First discovered in early 2014 in poultry and wild birds in South Korea, HPAI H5N8 virus apparently arose in China from reassortment events between HPAI subtype H5N1 virus and several low pathogenicity viruses (LPAIVs). The H5N8 virus was subsequently detected in waterfowl in Russia in September 2014, and since then, H5N8 virus and reassortants have been detected in poultry and wild birds in Europe (Netherlands, Germany, Italy, the United Kingdom, Hungary, and Sweden), Taiwan, Japan, Canada (British Columbia), and the western and central United States (Washington, Oregon, California, Idaho, Utah, Minnesota, Missouri, Arkansas, Kansas, Iowa, Wyoming, and Montana).

Wild waterfowl are a primary natural host for LPAIVs, and infection rates in these populations peak at autumn migratory staging locations, where large numbers of immunologically naive juvenile birds congregate. The HPAI H5N8 virus has apparently adapted to wild waterfowl hosts: few or no clinical signs or adverse effects are apparent in these hosts when infected with the virus. Thus, it seems probable that the virus was disseminated out of Russia into Europe, East Asia, and North America by migrating waterfowl during autumn 2014.

http://wwwnc.cdc.gov/eid/  Emerging Infectious Diseases

http://wwwnc.cdc.gov/eid/article/21/7/15-0403_article Original web page at Emerging Infectious Diseases

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Songbirds have a thing for patterns

You might think that young children would first learn to recognize sounds and then learn how those categories of sounds fit together into words. But that isn’t how it works. Rather, kids learn sounds and words at the same time. In fact, the higher-level patterns — those words — are key in learning to recognize and place speech sounds into meaningful categories. That’s why children who grow up in Japanese-speaking homes don’t recognize the difference between ‘r’ and ‘l’ sounds. In Japanese, that distinction doesn’t matter. Now, researchers reporting in the Cell Press journal Current Biology on June 25 present evidence from European starlings showing that songbirds learn their songs in much the same way.

‘It wasn’t clear whether this kind of learning — where knowledge of a pattern informs understanding about the categories that make up the patterns — was unique to humans and language, or is a more general process shared with other animals,’ says Timothy Gentner of the University of California, San Diego. ‘We showed that this kind of learning is shared with, at least, songbirds. When birds learn to recognize patterns of song elements, they get a big boost in their ability to categorize those elements.’

Starlings’ songs consist of short, stereotyped patterns of simple notes grouped into ‘motifs’ and longer, well-defined sequences of motifs organized into bouts. Those motifs fall into one of four categories: whistles, warbles, rattles, or high frequencies. Gentner and his colleagues wanted to find out how patterns influence starlings in their ability to categorize those sounds.

Jordan Comins, a graduate student in Gentner’s lab and lead author of the study, trained four starlings to differentiate complex auditory patterns following the form AABB and BBAA from those that followed the form ABAB and BABA, where A and B denote natural motif categories of warbles and rattles. The researchers trained a second group in the same way, except that they shuffled the patterns.

The researchers found that the birds presented with clear patterns of sounds were at a big advantage over the other group in their ability to correctly categorize the motifs they’d heard. The findings show that songbirds rely on patterns in much the same way that people do. ‘We ‘hear’ words, not sequences of speech sounds,’ Gentner says. ‘While it is tempting to think that this is a uniquely human way of perceiving the world, it is not.’

Birds may not have language, but they still can teach us much about the biological and psychological mechanisms that make language and language learning possible, the researchers say. Having identified this basic form of shared top-down learning, Gentner’s team will now explore more subtle details of the perceptual categories and patterns in the birds to see how precisely they match human speech acquisition. They will also examine the extent to which pattern knowledge shapes the representation of complex vocal signals in the songbird brain.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150625130900.htm  Original web page at Science Daily

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Why parrots are great vocal imitators

Scientists have uncovered key structural differences in parrot brains that may help explain why this group of bird species can mimic speech and songs so well. These brain structures went unrecognized in studies published in the past 34 years. The results may lend insight into the neural mechanisms of human speech.

The parrot’s brain has a nested ‘core and shell’ structure for vocal learning. Neurons in the shell surrounding the established vocal centers of the parrot brain play a part in vocal learning and other complex motor behaviors, resolving controversies over the size of brain areas involved in song and speech imitation.

An international team of scientists led by Duke University researchers has uncovered key structural differences in the brains of parrots that may explain the birds’ unparalleled ability to imitate sounds and human speech.

Reported June 24 in PLOS ONE, these brain structures had gone unrecognized in studies published over the last 34 years. The results also may lend insight into the neural mechanisms of human speech. ‘This finding opens up a huge avenue of research in parrots, in trying to understand how parrots are processing the information necessary to copy novel sounds and what are the mechanisms that underlie imitation of human speech sounds,’ said Mukta Chakraborty, a post-doctoral researcher in the lab of Erich Jarvis, an associate professor of neurobiology at Duke and a Howard Hughes Medical Institute Investigator.

Parrots are one of the few animals considered ‘vocal learners,’ meaning they can imitate sounds. Researchers have been trying to figure out why some bird species are better imitators than others. Besides differences in the sizes of particular brain regions, however, no other potential explanations have surfaced.

By examining gene expression patterns, the new study found that parrot brains are structured differently than the brains of songbirds and hummingbirds, which also exhibit vocal learning. In addition to having defined centers in the brain that control vocal learning called ‘cores,’ parrots have what the scientists call ‘shells,’ or outer rings, which are also involved in vocal learning.

The shells are relatively bigger in species of parrots that are well known for their ability to imitate human speech, the group found. Until now, the budgerigar (common pet parakeet) was the only species of parrot whose brain had been probed for the mechanisms of vocal learning.

This team included researchers from Denmark and the Netherlands who donated precious brain tissue for the study. They characterized the brains of eight parrot species besides the budgerigar, including conures, cockatiels, lovebirds, two species of Amazon parrots, a blue and gold macaw, a kea and an African Grey parrot.

The researchers looked for specific gene markers that are known to have specialized activity in the brains of humans and song-learning birds. They compared the resulting gene expression patterns in all the parrot brains with neural tracing experiments in budgerigars.

Even the most ancient of the parrot species they studied, the Kea of New Zealand, has a shell structure — albeit rudimentary. This suggests that the populations of neurons in the shells probably arose at least 29 million years ago.

Before now, some scientists had assumed that the regions surrounding the cores had nothing to do with vocal learning. In a 2000 study, Jarvis and Claudio Mello of Oregon Health & Science University concluded that the core and shell were actually one large structure. These differing views caused confusion about the sizes of the brain regions important for vocal learning. Jarvis teamed up with Steven Brauth from the University of Maryland and his former postdoctoral fellow Sarah Durand, to help reconcile this confusion.

‘The first thing that surprised me when Mukta and I were looking at the new results is, ‘Wow, how did I miss this all these years? How did everybody else miss this all these years?” said Jarvis, who is also member of the Duke Institute for Brain Sciences. ‘The surprise to me was more about human psychology and what we look for and how biased we are in what we look for. Once you see it, it’s obvious. I have these brain sections from 15 years ago, and now I can see it.’

The new results support the group’s hypothesis that in humans and other song-learning animals, the ability to imitate arose by brain pathway duplication. How such a copy-and-paste job could have happened is still unknown.

‘How can you get a mirrored song system surrounding another one?’ Jarvis asks. ‘Each (vocal learning center) has a core and a shell in the parrot, suggesting that the whole pathway has been duplicated.’

Most of the bird’s vocal learning brain regions are tucked into areas that also control movement. These areas in parrots also show some special patterns of gene expression, which the scientists speculate might explain why some parrots are also able to learn to dance to music. ‘It takes significant brain power to process auditory information and produce the movements necessary for mimicking sounds of another species,’ Chakraborty said. ‘The question is, how specialized are these parrot brains, and in what ways? Is it just a select group of specialized genes, or is it some specific projections that we haven’t discovered yet?’

The scientists are especially curious about whether the shells give parrots a greater ability to imitate human speech. ‘If that’s true, then we’ve answered a big question in our field that people have been wanting to know for many years,’ Jarvis said. This finding is a part of a much larger international effort to sequence the complete genomes of all 10,000 species of birds in the next five years, called the Bird 10K Project.

http://www.sciencedaily.com/   Science Daily

http://www.sciencedaily.com/releases/2015/06/150624143154.htm  Original web page at Science Daily

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The challenge of measuring a bird brain

To understand what’s going on within a species, you have to know how to measure their brains. And if you want to study wild species without killing your subjects, you have to figure out a way to measure their brains without removing them from their respective skulls. The method commonly used to compare the size of an animal’s skull and brain can be far from accurate, researchers say. In research, sometimes setting out to demonstrate one concept actually results in proving something entirely different. It’s important to be flexible.

Take, for example, Corina Logan, whose work focuses on the cognitive abilities of the great-tailed grackle, a member of the blackbird family. A junior research fellow at UC Santa Barbara’s SAGE Center for the Study of the Mind when she conducted her research, Logan sought to find a way to accurately approximate the brain size of live grackles by measuring their heads rather than the inside of their skulls.

Instead, she discovered that the method biologists and other scientists have been using to compare brain size across species is not appropriate for looking at individual differences within a species — particularly this species. Her findings, supported by the National Geographic Society/Waitt Grants Program, are published in the scholarly journal PeerJ.

‘People love to study brain size,’ said Logan, currently a Leverhulme Early Career Research Fellow in the Department of Zoology at the University of Cambridge. ‘It’s a huge topic. And there is growing interest in how brain size varies within a species, which can tell us what factors contribute to the evolution of large brains.’

To understand what’s going on within a species, Logan continued, you have to know how to measure their brains. And if you want to study wild species without killing your subjects, you have to figure out a way to measure their brains without removing them from their respective skulls. ‘That’s what I was trying to do — study them in the wild after measuring them so I could see whether their brain size influences their behavior or the number of offspring they have,’ she explained. ‘I was trying to measure brain size without measuring their actual brains.’

So Logan and co-author Christin Palmstrom, an undergraduate student in biology when the research was conducted, acquired skulls from museums and measured them via two methods: They used CT scans to measure the volume of the inside of the braincase and they used calipers to measure the external skull. The scanned the skulls and then used computer software to calculate the endocranial volume, which, according to Logan, is a common proxy for brain size. The CT scan was the more accurate method for calculating endocranial volume, to which they compared length, width and height measurements the made using the calipers. ‘If the external skull measurements matched the volumes from the CT scans well enough, then we could use the CT scan or caliper methods interchangeably,’ Logan said. They don’t.

According to Logan, it’s impossible to approximate brain size using the external skull measurement because it varies so much within this species. That was surprising to her on a couple of levels. ‘First, I was surprised that the external skull measurements did not accurately predict the actual endocranial volumes,’ she said. ‘But I was also surprised that there was so much variation, particularly in males.’

Scientists don’t generally publish negative results — i.e. not finding what they’re looking for — but in this case, Logan’s unexpected result is quite interesting. She demonstrated that the Pearson product-moment correlation coefficient, which is commonly used to measure the degree to which two variables relate to each other (such as the two indirect measures of brain size), is not the right test to apply to these data. It overlooks differences in the individual data points, she noted, which was the whole point of the study.

‘People see a ‘significant correlation’ between two sets of measurements and think it works,’ Logan said. ‘But it’s often not a very tight correlation. There is an overreliance on any level of correlation as long as it’s significant.’ So Logan decided to try a different analysis to confirm — or not — how well the external skull measurements approximate endocranial volume calculations. Her question: If you gather data from new skulls, how well will these external skull measurements predict endocranial volume using the CT scan method if you don’t actually CT scan the skulls?

What I found is that if you plug in a new number, you can’t tell it apart from the other numbers in the data set because the prediction intervals for most of the data points overlapped with each other,’ she said. ‘So the external skull measurements aren’t helpful. They don’t tell us what their brain size actually is.’ The results, she added, emphasize the importance of validating and explicitly quantifying the predictive accuracy of brain size proxies for each species and sex.

According to Logan, scientists can no longer take for granted what has previously been determined as accurate and correct. ‘Statistical methods in biology are in flux right now,’ she said. ‘People are switching from using statistics based on p-values, like the Pearson correlation, to methods that allow one to look at the finer details of the effects occurring in the data set.’

Key to the success of this research, according to Logan was UCSB’s Cheadle Center for Biodiversity and Ecological Restoration (CCBER), which preserves and manages multiple natural history collections, including plants, animals, algae and diatoms. This ‘amazing resource,’ as she described it, enabled Palmstrom, to gather the necessary data for the research project. And for that she needed a large enough number of intact grackle skulls for this species, which aren’t available in California.

‘Christin was doing some volunteer work at CCBER and found out they could borrow the specimens from other museums,’ said Logan. In this case, CCBER borrowed grackle skulls from the Museum of Southwestern Biology in Albuquerque, New Mexico, and the University of Kansas Biodiversity Institute to complete the sample size, which also included one skull from the Santa Barbara Museum of Natural History.

‘So Christin would wait for the skulls to arrive and then go to CCBER to measure them,’ Logan went on. ‘Collections manager Mireia Beas-Moix handled everything and helped us find more skulls. Usually research dollars are tight and no one has the resources to offer assistance like this, but CCBER was a wealth of support.’ In her work, Logan studies live birds rather than skeletons, but as she said, ‘Working with museum specimens can fill a really important piece of the puzzle for me.’

http: www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150622141119.htm  Original web page at Science Daily

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Why parrots are great vocal imitators

An international team of scientists led by Duke University researchers has uncovered key structural differences in the brains of parrots that may explain the birds’ unparalleled ability to imitate sounds and human speech. Reported June 24 in PLOS ONE, these brain structures had gone unrecognized in studies published over the last 34 years. The results also may lend insight into the neural mechanisms of human speech.

‘This finding opens up a huge avenue of research in parrots, in trying to understand how parrots are processing the information necessary to copy novel sounds and what are the mechanisms that underlie imitation of human speech sounds,’ said Mukta Chakraborty, a post-doctoral researcher in the lab of Erich Jarvis, an associate professor of neurobiology at Duke and a Howard Hughes Medical Institute Investigator.

Parrots are one of the few animals considered ‘vocal learners,’ meaning they can imitate sounds. Researchers have been trying to figure out why some bird species are better imitators than others. Besides differences in the sizes of particular brain regions, however, no other potential explanations have surfaced.

By examining gene expression patterns, the new study found that parrot brains are structured differently than the brains of songbirds and hummingbirds, which also exhibit vocal learning. In addition to having defined centers in the brain that control vocal learning called ‘cores,’ parrots have what the scientists call ‘shells,’ or outer rings, which are also involved in vocal learning. The shells are relatively bigger in species of parrots that are well known for their ability to imitate human speech, the group found.

Until now, the budgerigar (common pet parakeet) was the only species of parrot whose brain had been probed for the mechanisms of vocal learning.

This team included researchers from Denmark and the Netherlands who donated precious brain tissue for the study. They characterized the brains of eight parrot species besides the budgerigar, including conures, cockatiels, lovebirds, two species of Amazon parrots, a blue and gold macaw, a kea and an African Grey parrot.

The researchers looked for specific gene markers that are known to have specialized activity in the brains of humans and song-learning birds. They compared the resulting gene expression patterns in all the parrot brains with neural tracing experiments in budgerigars.

Even the most ancient of the parrot species they studied, the Kea of New Zealand, has a shell structure — albeit rudimentary. This suggests that the populations of neurons in the shells probably arose at least 29 million years ago.

Before now, some scientists had assumed that the regions surrounding the cores had nothing to do with vocal learning. In a 2000 study, Jarvis and Claudio Mello of Oregon Health & Science University concluded that the core and shell were actually one large structure. These differing views caused confusion about the sizes of the brain regions important for vocal learning. Jarvis teamed up with Steven Brauth from the University of Maryland and his former postdoctoral fellow Sarah Durand, to help reconcile this confusion.

‘The first thing that surprised me when Mukta and I were looking at the new results is, ‘Wow, how did I miss this all these years? How did everybody else miss this all these years?” said Jarvis, who is also member of the Duke Institute for Brain Sciences. ‘The surprise to me was more about human psychology and what we look for and how biased we are in what we look for. Once you see it, it’s obvious. I have these brain sections from 15 years ago, and now I can see it.’

The new results support the group’s hypothesis that in humans and other song-learning animals, the ability to imitate arose by brain pathway duplication. How such a copy-and-paste job could have happened is still unknown.

‘How can you get a mirrored song system surrounding another one?’ Jarvis asks. ‘Each (vocal learning center) has a core and a shell in the parrot, suggesting that the whole pathway has been duplicated.’

Most of the bird’s vocal learning brain regions are tucked into areas that also control movement. These areas in parrots also show some special patterns of gene expression, which the scientists speculate might explain why some parrots are also able to learn to dance to music.

‘It takes significant brain power to process auditory information and produce the movements necessary for mimicking sounds of another species,’ Chakraborty said. ‘The question is, how specialized are these parrot brains, and in what ways? Is it just a select group of specialized genes, or is it some specific projections that we haven’t discovered yet?’

The scientists are especially curious about whether the shells give parrots a greater ability to imitate human speech.

‘If that’s true, then we’ve answered a big question in our field that people have been wanting to know for many years,’ Jarvis said. This finding is a part of a much larger international effort to sequence the complete genomes of all 10,000 species of birds in the next five years, called the Bird 10K Project.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150624143154.htm  Original web page at Science Daily

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Birds, not just mammals, copy yawns

Have you ever caught yourself yawning right after someone else did? The same happens to budgies, says Andrew Gallup of State University of New York in the US. His research team is the first to note that contagious yawning also occurs between members of a bird species. Thus far, it has only been known to happen with a few mammals. The results are published in Springer’s journal Animal Cognition.

Contagious yawning was previously thought only to occur between humans, domestic dogs, chimpanzees and a type of rodent aptly called the high-yawning Sprague-Dawley rat. “To date, this is the first experimental evidence of contagious yawning in a non-mammalian species,” says study leader Gallup. Budgies are of Australian origin and are often kept in cages as pets. The findings that contagious yawning occurs between budgerigars (Melopsittacus undulatus), also known as parakeets, in a controlled laboratory setting corroborate a previous observation of the same thing happening in a flock of these social parrots. In the wild, these birds form lasting bonds within breeding pairs and interact within coordinated flocks throughout the year. In a laboratory setting, budgies are known to automatically imitate video stimuli shown to them.

Gallup’s team conducted two experiments. In the first, 16 birds were paired in adjacent cages with and without barriers blocking their view. If contagious, yawns should be clustered in time only when the birds can see another. In the second experiment, the same birds were shown separate video clips of a budgie yawning and not yawning. Yawning was found to occur three times as often within a five-minute window when the birds could see one another than when their view was blocked from the other bird. When they were viewing video clips of another budgie yawning, yawns occurred twice as often. This response was not the result of stress or anxiety.

The researchers believe that contagious yawning is more than just an involuntary action, but is rather a primitive form of showing empathy. It has for instance been found that it is more common among people who are deemed to be more empathic. Thanks to a process called emotional contagion or state matching, contagious yawning occurs when a person thinks about or senses someone else carrying out this somewhat drowsy action.

Birds are known to have certain emphatic responses. Gallup therefore proposes that since contagious yawns can be experimentally manipulated, budgies could be used as a good model to explore other primitive forms of empathic processing in birds.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/05/150528083830.htm  Original web page at Science Daily

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DNA that only females have

In many animal species, the chromosomes differ between the sexes. The male has a Y chromosome. In some animals, however, for example birds, it is the other way round. In birds, the females have their own sex chromosome, the W chromosome. For the first, researchers have mapped the genetic structure and evolution of the W chromosome. In a new study, researchers show that, surprisingly enough, a bird’s W chromosome does not contain genes that lead to the development of a female.

In many animal species, the chromosomes differ between the sexes. The male has a Y chromosome. In some animals, however, for example birds, it is the other way round. In birds, the females have their own sex chromosome, the W chromosome. For the first, researchers in Uppsala have mapped the genetic structure and evolution of the W chromosome.

Every individual of a species has the same sorts of chromosomes, with one exception. In many species, the way the sexes differ is that males have their own sex chromosome, the Y chromosome. This contains genes which result in the development of male characters and reproductive organs. If there is no Y chromosome, the organism will be a female.

In birds, however, the situation is different. It is the females which have a unique sex chromosome — the W chromosome.  In a study published in Nature Communications, Linnea Smeds, Hans Ellegren and their colleagues show that, surprisingly enough, a bird’s W chromosome does not contain genes that lead to the development of a female. “Sex determination in birds and other animals with a W chromosome seems instead to depend upon the number of their equivalent to the X chromosome. Two copies of it produces a male, one copy (plus a W chromosome) produces a female,” says Hans Ellegren.

The W chromosome seems instead to function as some kind of buffer for females since it contains genes similar to those in the X chromosome. In order for certain genes to work, it is critical that an individual has two copies of that gene. In this way, the W chromosome can serve as a complement for females who only have one copy of the X chromosome. Researchers have discovered that the W chromosome changes at a slower rate than any other part of the genetic material. “This is because it is only inherited on the maternal side and fewer mutations arise in females than in males,” says Hans Ellegren.

Most mutations occur during the formation of germ cells. Males produce a vastly greater number of germ cells than females and so the probability that a sperm contains a new mutation is much greater than for an egg cell. The W chromosome is the only chromosome from the cell nucleus which is inherited on the maternal side. It shares this property with the small amount of DNA found in cell mitochondria.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150604084511.htm  Original web page at Science Daily

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Researchers analyze the structure of bird feathers to create hues without dye

Work from a research team is seeking to produce synthetic particles that mimic the tiny packets of melanin found in feathers. These tiny packets of synthetic melanin produce structural color, like in a bird’s feather, when they are packed into layers. Structural color occurs through the interaction of light with materials that have patterns on a tiny scale, which reflect light to make some wavelengths brighter and others darker.

Imagine a favorite T-shirt that does not dull with time, or a car that never needs a new coat of paint. A study done at The University of Akron may be able to make this a reality in the near future. Research performed at UA sought to recreate structural color patterns found in bird feathers to generate color without the timely and outdated use of pigments and dyes. Structural color should never diminish in hue and could even potentially be altered at someone’s preference.

UA associate professor of biology, Dr. Matthew Shawkey, his colleague Dr. Ali Dhinojwala, Morton Professor of Polymer Science, and Ming Xiao, graduate student, recently published a paper in a joint project with the University of California, San Diego. Shawkey and his team sought to produce synthetic particles that mimic the tiny packets of melanin found in feathers.

These tiny packets of synthetic melanin produce structural color, like in a bird’s feather, when they are packed into layers. Structural color occurs through the interaction of light with materials that have patterns on a tiny scale, which reflect light to make some wavelengths brighter and others darker.

The discoveries published in the journal ACS Nano reflect a milestone in biomimicry research. These findings are just the beginning in a growing field that seeks to improve human life by imitating the success of natural designs and methods. Structural color in particular has many potential functions. According to Dhinojwala, ‘One could think about applications as sensors, photo-protectors, and even perhaps an approach to create a wide range of colors without using any pigments,’ he says. Shawkey praises the benefits of structural color, saying, ‘Pigments are both financially and environmentally costly, and can only change color by fading. Structural colors can, in theory, be produced from more common, environmentally friendly materials and could potentially be changed depending on the environment or your whims.’

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150608152030.htm  Original web page at Science Daily

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Using 3-D printing, researchers can study what causes birds to reject eggs with greater precision and repeatability

For decades, researchers have been making artificial eggs out of plaster, wood, and other materials to test how birds identify and reject the eggs that invading ‘brood parasites’ sometimes sneak into their nests. But these methods have many limitations; a new study is the first to test the usefulness of 3-D printed eggs for research on egg rejection. Old-school field work meets cutting-edge technology! For decades, researchers have been making artificial eggs out of plaster, wood, and other materials to test how birds identify and reject the eggs that invading “brood parasites” sometimes sneak into their nests. But these methods have many limitations, and a new study published in the open-access journal PeerJ is the first to test the usefulness of 3D printed eggs for research on egg rejection.

Brood parasites are birds that don’t build nests of their own. Instead, they slip their eggs into the nests of other species, where oblivious parents may raise these invading chicks even at the expense of their own. In some species, this has led to an evolutionary arms race in which host parents get better and better at identifying and rejecting eggs that aren’t theirs, using cues including egg size, shape, color, and pattern, while brood parasites have become increasingly adept at mimicking the eggs of their host species. To study egg rejection behavior and figure out how bird parents identify impostor eggs, ornithologists have long been doing experiments which involve adding artificial eggs to nests and observing what the parents do

The problem is that making convincing, uniform artificial eggs out of traditional materials like plastic, wood, and plaster-of-Paris is surprisingly challenging. The fake eggs can be time-consuming to produce, prone to human error, and hard for other researchers to replicate exactly, which is important in confirming scientific findings. To get around these limitations, researchers created digital models of the eggs of Brown-headed Cowbirds (a North American brood parasite) and created them using 3D printers. 3D printing also allowed for the creation of hollow eggs that could be filled with water or gel, closely mimicking not just the weight but even the thermodynamic properties of real eggs.

Painted beige to match real cowbird eggs or blue-green to match the eggs of the host American robins, the 3D printed eggs were placed in robin nests, which were then monitored for six days to see how the parents reacted. Robins accepted 100% of the blue-green eggs but rejected 79% of the eggs which were painted to resemble those of cowbirds. Reassuringly, this is similar to the results of past studies using traditionally-produced plaster eggs, however 3D printed eggs now have the advantage of being less variable and more able to reproduce a desired size and shape. In addition, the digital models used to produce them can be shared among researchers so that experiments can be replicated more precisely than was possible in the past.

“Hosts of brood parasites vary widely in how they respond to parasitic eggs, and this raises lots of cool questions about egg mimicry, the visual system of birds, the ability to count, cognitive rules about similarity, and the biomechanics of picking things up,” says Prof. Don Dearborn, chair of the Biology Department at Bates College, a brood parasitism expert who was not involved in the 3D printing study. “For decades, tackling these questions has meant making your own fake eggs — something we all find to be slow, inexact, and frustrating. This study uses 3D printing for a more nuanced and repeatable egg-making process, which in turn will allow more refined experiments on host-parasite coevolution. I’m also hopeful that this method can be extended to making thin-shelled, puncturable eggs, which would overcome another one of the constraints on these kinds of behavioral experiments.”

“3D printing technology is not just in our future — it has already revolutionized medical and basic sciences,” says Prof. Mark Hauber, an animal behaviorist at Hunter College of the City University of New York, the study’s senior author. “Now it steps out into the world of wild birds, allowing standardized egg rejection experiments to be conducted throughout the world.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/05/150526085547.htm  Original web page at Science Daily

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Birds ‘weigh’ peanuts and choose heavier ones

Mexican Jays (Aphelocoma wollweberi) distinguish between heavier and lighter peanuts without opening the nuts. The birds do it by shaking the nuts in their beaks, which allows them to ‘feel’ nut heaviness and to listen to sounds produced by peanuts during handling Mexican Jays (Aphelocoma wollweberi) handling peanut pods appear to evaluate the pod content by ‘weighing’ the pods and by ‘listening to’ them.

Many animals feed on seeds, acorns or nuts. The common feature of these are that they have shells and there is no direct way to know what’s inside. How do the animals know how much and what quality of food is hidden inside? A simple solution would be to break the shells, which often takes time and effort — it would be a big disappointment to know that it’s rotten or bad after the hard effort of opening the nuts! Can animals evaluate the food hidden inside the nuts? This is especially important for some animals who cache the food items for later use without opening and checking each item. We can detect which one is heavier by moving the items up and down several times and focusing on the “feeling of heaviness” we perceive. Humans can also detect the quality of a water melon by knocking on it.

A new study published in Journal of Ornithology suggests that some birds can also use similar tricks in choosing the peanuts from the feeder. Their study was carried out in Arizona by an international research team from Poland and Korea and revealed that the Mexican Jays (Aphelocoma wollweberi) may be able to “weigh” peanuts and maybe even “listen to” peanuts while handling them in their beaks. Drs. Sang-im Lee, Piotr Jablonski, Maciej and Elzbieta Fuszara, the leading researchers in this study, together with their students and helpers, spent many hours delicately opening shells of hundreds of peanuts, changing the contents and then presenting them to the jays in order to see if the birds can figure out the differences in the content of identically looking peanut pods (peanuts in shell).

“When we presented the jays with ten empty and ten full identically looking pods (pods without or with three nuts inside), we noticed that after picking them up the birds rejected the empty ones and accepted the full peanuts, without opening them.” says Dr. Sang-im Lee of Seoul National University — the corresponding author of the paper. A series of similar experiments with identically looking normal nuts and nuts that were 1g heavier (pods with some clay added) confirmed that jays always were able to distinguish and preferred the heavier nuts. How did they know which were empty without opening them? The researchers used slow motion videos to see what happens when the bird is deciding whether to drop or take away the peanut pod. “We found out that birds shake the nuts in their beaks. We think that these movements may provide them with the information generally similar to our feeling of “heaviness” when we handle an object in our hands,” says Dr. Jablonski.

In another experiment the researchers prepared one type of peanut pods by opening the shell, removing two out of the three nuts and closing the shell again. The second type of pod was prepared by opening a small pod, which normally contains only one nut, and closing it. Thus, the jays were to choose between nuts of similar content and mass but of different size. “The jays figured out that the larger pods did not weigh as much as they should and the birds preferred the smaller pods, which weighed as expected for their size,” comments Dr. Fuszara. They behaved as if they knew that “something is wrong” with the larger nuts.

So how do they know it? When they shake the nuts in their beaks, the birds produce sounds by opening and closing their beaks around the peanut shell for brief moments. The researchers think that the jays also take this sound into account. “Our next goal is to disentangle the role of sound relative to the perception of “heaviness,” and to determine if jays use the same sensory cues for acorns — their natural food,” conclude Dr. Lee and Dr Jablonski.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/05/150522174719.htm  Original web page at Science Daily

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Vulnerable grassland birds abandon mating sites near wind turbines

Shifting to renewable energy sources has been widely touted as one of the best ways to fight climate change, but even renewable energy can have a downside, as in the case of wind turbines’ effects on bird populations. In a new paper, a group of researchers demonstrate the impact that one wind energy development in Kansas has had on Greater Prairie-Chickens (Tympanuchus cupido) breeding in the area. Greater Prairie-Chickens are more likely to abandon mating sites near wind turbines, according to a new study in The Condor.

Shifting to renewable energy sources has been widely touted as one of the best ways to fight climate change, but even renewable energy can have a downside, as in the case of wind turbines’ effects on bird populations. In a new paper in The Condor: Ornithological Applications, a group of researchers demonstrate the impact that one wind energy development in Kansas has had on Greater Prairie-Chickens (Tympanuchus cupido) breeding in the area. Virginia Winder of Benedictine College, Andrew Gregory of Bowling Green State University, Lance McNew of Montana State University, and Brett Sandercock of Kansas State University monitored prairie-chicken leks, or mating sites, before and after turbine construction and found that leks within eight kilometers of turbines were more likely to be abandoned.

Leks are sites at which male prairie-chickens gather each spring to perform mating displays and attract females. The researchers visited 23 leks during the five-year study to observe how many male birds were present and to record the body mass of trapped males. After wind turbine construction, they found an increased rate of lek abandonment at sites within eight kilometers of the turbines as well as a slight decrease in male body mass. Lek abandonment was also more likely at sites where there were seven or fewer males and at sites located in agricultural fields instead of natural grasslands.

This paper is the latest in a series of studies on the effects of wind energy development on prairie-chickens. “To me, what is most interesting about our results is that we are now able to start putting different pieces of our larger project together to better understand the response of Greater Prairie-Chickens to wind energy development at our field site,” says study co-author Virginia Winder. “We have found that both male and female prairie-chickens have negative behavioral responses to wind energy development. The data we collected to monitor this response have also allowed us new insights into the ecology of this species. For example, lek persistence at our study site depended not only on distance to turbine, but also male numbers and habitat.”

The findings of this study reinforce the U.S. Fish and Wildlife Service recommendation that no new wind energy development should be done within an eight-kilometer buffer around active lek sites. “It is critical to have rigorous evaluations of direct and indirect effects of wind energy facilities on species such as prairie-chickens,” according to grassland wildlife management expert Larkin Powell, who was not involved with the research. “The potential for trade-offs between renewable energy and wildlife populations on the landscape is one of the key questions of our day.”

http://www.sciencedaily.com/ Science Daily

http://www.sciencedaily.com/releases/2015/05/150506164232.htm  Original we page at Science Daily

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What drives the evolution of bird nest structures?

How to protect your chicks from predators? Build a dome over them! There is tremendous diversity among the nests of birds, in nest location, structure, materials, and more, but we know very little about the forces that shaped the evolution of this incredible variety. In a new paper published in The Auk: Ornithological Advances, Zachary Hall, Sally Street, Sam Auty, and Susan Healy of the University of St. Andrews in Scotland test the hypothesis that domed-shaped nests arose as a result of some species transitioning to nesting on the ground, where the risk from predators is greater.

Hall was completing his Ph.D. work on the neurobiology of nest-building behavior when he noticed that very little work had been done on trying to understand why different bird species build such drastically different nest structures. “I thought this was strange,” he explains, “because the shape of a nest seems to be the most striking and diverse feature across bird species.” The hypothesis that dome-shaped nests resulted from the increased predation risk when competition for nest sites led some birds to begin nesting on the ground was first proposed almost twenty years ago, but techniques at the time did not provide a way to test it. Applying statistical techniques he had previously used in his neurobiology study, Hall and his colleagues collected previously published descriptions of the nests of 155 species of babbler and mapped nest height and structure to the birds’ family tree.

Their analysis confirmed that babblers’ ancestors likely built above-ground, cup-shaped nests, and that the addition of a dome to cover the nest corresponded with switching to nesting at ground level. “This new study by Hall, Street, Auty, and Healy looks at the evolution of two key aspects of animals as architects: how they shape their homes and where they put them. It shows very nicely how we can take advantage of recent progress in avian phylogenetics to test ideas about the evolutionary history behind the modern-day co-occurrence of particular pairs of traits,” according to Don Dearborn, an expert in the evolution of reproductive strategies in birds. “I am very happy how well nest structure integrated into our analyses, but this study is only the tip of the iceberg, and we hope future work can use a similar approach to identify other factors that may have influenced the evolution of nest structure,” adds Hall.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/05/150506164238.htm  Original web page at Science Daily

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All invasive parakeets come from a small region in South America

The parakeets that have invaded Europe and North America over the last forty to fifty years, creating massive nests in many urban areas, seem to have originated from the same small geographical area in South America. In addition, the invasive populations are genetically identical and are recognized by a relatively rare dominant haplotype in the source population, an international team of researchers has concluded. The parakeets that have invaded Europe and North America over the last forty to fifty years, creating massive nests in many urban areas, seem to have originated from the same small geographical area in South America. In addition, the invasive populations are genetically identical and are recognised by a relatively rare dominant haplotype in the source population. This has been the conclusion of an international study in which Spanish scientists have participated.

The monk parakeet (Myiopsitta monachus), also known as the quaker parrot, is considered one of the most invasive bird species on the whole planet. Hundreds of thousands of them have been imported as pets over recent decades and their feral populations started to become an invasive species in the U.S.. in the 1960s and in Europe in the 1980s. However, these two independent populations seem to have originated from the same area of natural habitat, probably located between the south of Brazil (Río Grande do Sul), Argentina (Entre Ríos) and Uruguay, according to a study published in the journal Molecular Ecology in which the Doñana Biological Station (EBD-CSIC), the Pablo de Olavide University in Seville (UPO) and the Natural Science Museum in Barcelona have also participated. “For the study we used genetic information obtained from mitochondrial DNA and microsatellites to evaluate the genetic variability of the native area, South America, as well as three invaded areas located on three continents (North America, Europe and Africa) for the invasive species the monk parakeet Myiopsitta monachus,” Martina Carrete, co-author of the study and researcher for EDB and the UPO, explains to SINC.

Exotic invasive species are a fundamental component of global change and one of the main causes of native species dying out. It is for this reason that the variables determining the success of the establishment of such species have been studied from multiple perspectives. “Among other things, the existence of genetic variability is thought to be important, although there is no clear consensus on how this variability in the source populations and demographic processes affect the success of invasive species establishing themselves,” Carrete adds. The parakeets have been sold across the world as pets for years and have established invasive populations in many areas. “In particular, we evaluate whether the genetic diversity of invaded areas is a result of the genetic variability existing in the source populations (from which individuals have been imported) or demographic processes occurring during the introduction of these individuals,” comments the expert. Genetic diversity is lower in the invasive species

The study, which unravels the history behind the global parakeet invasion, also discovered that the North-American and European parakeets have less genetic diversity in their invasive populations than in their native populations. “Genetic data indicates that the source of the individuals which have stocked the invasive populations has a more restricted geographic origin, with little evidence for there having been a significant mix between the populations dwelling in the native geographical area,” stresses Carrete. This pattern matches the historical data on the export of individuals for their use as pets, which suggest that the majority of the individuals sold originate from the same area. “However, the invasive populations are more similar amongst themselves than would be expected just from this export data,” states the researcher.

In effect, the genetic variability observed in the invasive species is low, and suggests the existence of a demographic contraction and a restricted area of origin, but does not support the hypothesis that this invasion has been helped along by the mix and genetic recombination between individuals from multiple source populations. On the contrary, the scientists suggest that the reduced genetic variability observed in these invasive populations would not have negatively affected the success of their colonisation.

The reduced variability and great similarity presented in the invasive species studied suggest that convergent selection processes have also played a part in favouring the maintenance of certain haplotypes. “The presence of certain genetic characteristics would be important in explaining the success of the invasive species. Selection processes may also exist which determine this convergence in the genetic pattern of the invasive populations,” concludes the scientist. These selection processes during the invasion have not been considered before in these types of studies and could be important in explaining the success of certain invasive species.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/05/150511091429.htm  Original web page at Science Daily

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Massive southern invasions by northern birds linked to climate shifts

With puzzling variability, vast numbers of birds from Canada’s boreal forests migrate hundreds or thousands of miles south from their usual winter range. These so-called irruptions were first noticed by birdwatchers decades ago, but the driving factors have never been fully explained. Now scientists have pinpointed the climate pattern that likely sets the stage for irruptions — a discovery that could make it possible to predict the events more than a year in advance.

The researchers found that persistent shifts in rainfall and temperature drive boom-and-bust cycles in forest seed production, which in turn drive the mass migrations of pine siskins, the most widespread and visible of the irruptive migrants. “It’s a chain reaction from climate to seeds to birds,” says atmospheric scientist Court Strong, an assistant professor at the University of Utah and lead author of the study. Many seed-eating boreal species are subject to irruptions, including Bohemian and cedar waxwings, boreal chickadees, red and white-winged crossbills, purple finches, pine and evening grosbeaks, red-breasted nuthatches, and common and hoary redpolls. The authors focused on the pine siskin, a species featured prominently in earlier work on irruptive migrations.

Previous studies have found evidence that irruptions are triggered by food shortages caused by the large-scale collapse of seed production in northern pine, spruce and fir forests. “We’ve known for a long time that weather was probably important, but prior analyses by ecologists have been unable to identify exactly what role weather was playing in this phenomenon,” says ecologist Walt Koenig, a senior scientist at the Cornell Lab of Ornithology and co-author of the new study incorporating climate science. “It’s a good example of the value of interdisciplinary work,” Koenig says. To resolve the question, the scientists turned to a remarkable trove of data gathered by backyard birders as part of Project FeederWatch, a citizen science initiative run by the Cornell Lab of Ornithology. FeederWatcher volunteers systematically record bird sightings from November through early April and they gave the scientists more than two million observations of pine siskins since 1989. The crowd-sourced data makes it possible to track the movement of bird populations at a continent-wide scale.

“Avid birders across the U.S. and Canada have contributed sustained observations of birds at the same broad geographic scale in which weather and climate have also been observed and understood,” says co-author Julio Betancourt, a senior scientist with the U.S. Geological Survey in Reston, Virginia. Pine siskins breed during summer in Canadian boreal forests, where they rely heavily on tree seeds for food. When seeds are abundant, pine siskins in eastern North America largely stay put in the northern coniferous forests of Canada through the winter. But when seed production is poor, pine siskins and other boreal birds move elsewhere to find overwintering habitat with adequate food. During these irruptive years, the eastern populations of pine siskins forage as far south as the Appalachian Mountains. Western populations show less variability in irruptive movements.

Amateur birdwatchers have recorded dramatic shifts in siskin migrations over the years. The winter ending in 1990, for example, featured a massive “superflight” south of the boreal forest, while during the winter ending in 2004 there was a near absence of boreal pine siskins in the U.S. The winter ending in 2009 saw another big irruption south of the boreal forest, followed by greatly reduced counts the following winter. In the new study, researchers combined FeederWatch observations with climate data in a statistical analysis. This allowed them to link bird population movements with established patterns of climate variability across North America. As expected, they found that extremely cold winters tend to drive birds south during the irruption year.

More surprisingly, the researchers found a teeter-tottering pattern between the north and south that influences bird migrations two to three years later. When the prevailing weather is wet and cold and unfavorable to seed production in one region, it tends to be warmer and drier and favorable to seed production in the other region. This climate “dipole” tends to push and pull bird migrations across the continent. The heaviness of seed production in a given year depends on how favorable the climate was during the two or three previous years required to set and ripen seeds. That means that, in principle, it might be possible to predict irruptions up to two years in advance. The finding also raises a question about the impact of global climate change: could the perturbation by massive carbon dioxide emissions disrupt the coupling between north and south such that unfavorable conditions unfold simultaneously, leaving birds with poor seed supplies everywhere in some years?

The answer is unknown. “The boreal forest is the world’s largest terrestrial biome and is home to more than half of North America’s bird species,” says co-author Benjamin Zuckerberg, an assistant professor of wildlife ecology at the University of Wisconsin-Madison. “It is likely that these irruptions, driven by climate, are a critical indicator of how climate change will affect northern forests and their dependent species.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/05/150511162906.htm  Original web page at Science Daily

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Testosterone key to new bird bang theory

New research from a Wake Forest University biologist who studies animal behavior suggests that evolution is hard at work when it comes to the acrobatic courtship dances of a tropical bird species. Assistant professor of biology Matthew Fuxjager studies the physiological basis of bird behavior, with a particular emphasis on how hormones control complex social behavior. For his latest study, published April 13 in the journal Functional Ecology, he investigated how the ability to detect testosterone in the body regulates the acrobatic courtship and competitive behavior, or bird brawn, of male golden-collared manakins. “Our results provide the first evidence that androgenic sensitivity in select parts of the neuro-motor system is an evolved mechanism to facilitate performance abilities and acrobatics in physically elaborate socio-sexual displays,” Fuxjager said.

There are about 60 different species of manakins, most of which perform, to some degree, a physically complex display behavior to both court females and to compete with other males, he said. The researchers hypothesized that evolution acts to help shape the mating display behavior by controlling androgen sensitivity in the avian wing muscles. They measured androgen receptor (AR) levels in these tissues in multiple species of manakins that varied in terms of the physical complexity of their display to see whether this measure of androgen sensitivity corresponds to species differences in physical complexity of the display. What they found is that those birds with more complex displays had muscles more sensitive to testosterone. “This research has some interesting implications for how evolution exploits testosterone’s ability to influence muscle and natural forms of athleticism,” Fuxjager said. “Our current data support the hypothesis that sexual selection shapes levels of androgen receptors expressed in the forelimb skeletal muscles to help drive the evolution of adaptive motor abilities.” Fuxjager said elaborate physical displays are found in most species, but little is known about how physically complex movements are linked to sexual reproductive behavior or fighting. He plans to continue to study how testosterone sensitivity and other aspects of the genetics of muscle physiology have evolved across species to develop these behaviors.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/04/150422084051.htm  Original web page at Science Daily

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Diversity of habitat needed around spotted owl reserves, study shows

A new study shows that many bird species, including several of high conservation concern, aren’t getting the habitat they need due to a focus on promoting California Spotted Owl habitat in the northern Sierra Nevada. The study, published in the science journal, PLoS ONE, tracked different bird species’ use of areas inside and outside Spotted Owl reserves for two years in Plumas and Lassen National Forests. The results show 17 species avoided the reserves, including species of conservation concern like Yellow Warblers and Olive-sided Flycatchers, compared with only seven species preferring the habitat inside the reserves. Federal land managers have set aside reserves, or core areas, covering 1000 acres each of relatively mature and dense forest around historical or existing Spotted Owl nest locations. Unlike their cousin, the Northern Spotted Owl, California Spotted Owls currently are not federally listed as endangered.

“There is an absolutely clear need to continue to protect old growth forests,” said Ryan Burnett, Sierra Nevada Group Director for Point Blue Conservation Science and the study’s lead author. “However, we’re at a stage now where it’s time to re-evaluate our sometimes singular focus on old-growth forest management, and ensure we are balancing it with providing diverse forest habitats for the full range of species that rely on the Sierra ecosystem.” In the northern Sierra area of the study over 50 percent of the National Forest land base is designated to promote and protect mature, closed-canopy forest that supports less undergrowth, such as shrubs and grasses. Many bird species–and other wildlife–seek out undergrowth and the habitat provided in forest openings for food, shelter and nesting.

As part of the study, Burnett and colleagues monitored the bird community at 1,164 locations inside and outside Spotted Owl reserves. They found that they could conclusively determine the habitat preference for 24 bird species detected. Of those 24 species, 17 preferred habitat outside the reserves and only seven preferred habitat inside the reserves. Another 30 species were detected but it was unclear if those birds showed a preference or not. “Our current forest management may be focusing too much on a handful of mature, dense forest-associated species at the expense of others, including several of high conservation concern,” Burnett said. “The Sierra ecosystem evolved with disturbance, such as wildfire. It’s important we manage the areas outside of the old growth reserves for the wide range of habitat types and conditions that support a substantial portion of the ecosystem’s biological diversity, including early seral forest habitat.”

According to Burnett, a combination of forest management actions could promote habitat for many other species outside the reserves. An increased use of managed fire coupled with selective logging to thin overly dense forest stands can benefit many of the species that avoid mature, dense forest habitat and promote an ecosystem more aligned with current and future climate conditions.

http://www.nature.com/news/index.html  Nature

http://www.sciencedaily.com/releases/2015/04/150428142100.htm

Original web page at Nature

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* ‘Flameproof’ falcons and hawks: Most polluted bird on record found in Vancouver

A Cooper’s hawk, found in Greater Vancouver, is the most polluted wild bird that has been found anywhere in the world. A team of Canadian researchers made this startling discovery while analyzing liver samples from birds of prey that were discovered either injured or dead in the Vancouver area.

The levels of polybrominated diphenyl ethers (PBDEs) in the contaminated Cooper’s hawk were 196 parts per million, significantly higher than those recorded in birds found either in cities in California or in an electronic waste site in China. PBDEs are a group of chemicals that act as flame retardants and were once used widely in computers, stereos, televisions, vehicles, carpets and furniture. Although many of the PBDEs have been banned since the 2000s in Canada, they continue to accumulate in landfill sites where people dispose of PBDE-rich items. In British Columbia’s Fraser River delta, for example, the quantity of PBDEs has doubled every four years over the past four decades. This can have a significant effect on the bird populations that live nearby.

“Many animals, including coyotes, eagles and hawks benefit from the excess food in our cities. A downside is the high levels of pollution. The levels of flame retardants in starlings, a favourite prey of hawks, which nested near the landfill site were fifteen times higher than levels in starlings found elsewhere in Vancouver,” says Prof. Kyle Elliott, of McGill’s Department of Natural Resource Sciences, one of the authors of the study which was recently published in the journal Science of the Total Environment. “We were surprised to see such high levels of contaminants in what I think of as ‘green’ city. We can only hope that because many forms of PBDEs have now been banned and the levels of these contaminants are rapidly disappearing from herons and cormorants in Vancouver, the same will be true for other bird species.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/04/150422165035.htm

Original web page at Science Daily

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Researchers create tool to predict avian flu outbreaks

U of G researchers devised a real-time way to analyze chickens and other farm birds for avian flu. The tool uses a small blood sample and relies on a simple chemical colour change to see not only whether a chicken has avian flu but also what viral strain is involved. Current tests require samples to be sent to a lab, where it can take eight hours to a couple of days to yield results. That’s too long, said Prof. Suresh Neethirajan, School of Engineering.”Treatment, especially when dealing with humans who have been infected, needs to start as soon as possible,” he said. “This test only needs two to three minutes to incubate, and then you get the results immediately. Not only that, but it is more cost-effective. Conventional techniques are time-consuming and labour-intensive, and require special facilities and expensive laboratory instruments.”

A study about the device will appear in an upcoming issue of the scientific journal Sensors, published by Molecular Diversity Preservation International (MDPI). This week, Canadian officials placed eight farms in southern Ontario under quarantine after an avian influenza outbreak caused the sudden deaths of thousands of birds over several days. Preliminary testing on the strain was conducted at U of G’s Animal Health Lab. An outbreak of avian flu also took place in Canada in January and December of 2014

Neethirajan and post-doctoral researcher Longyan Chen wanted to create a test that could be used by anyone, even a non-scientist. “That is why we designed it so that the final colour changes based on what type of influenza it is, and it can differentiate between a human strain and a bird strain,” said Neethirajan. “It’s critical to get out front of any outbreaks. There are many strains, and we need to know the source of the flu. The identification of the strain determines what treatment options we should use.” The device uses gold nanoparticles (microscopic particles) and glowing quantum dots. The researchers developed a novel approach for rapid and sensitive detection of surface proteins of viruses from blood samples of turkeys.

The new nanobiosensor can detect the strains of H5N1 and H1N1. The most recent outbreak was from H5N2, which is similar to H5N1, Neethirajan said. With some architecture modifications, the developed biosensing technique has the potential to detect the H5N2 strain as well, he said. The subtype H1N1 is human adapted while most H5 are avian oriented, Neethirajan added. “We’re creating a rapid animal health diagnostic tool that needs less volume of blood, less chemicals and less time. We will be able to determine, almost immediately, the difference between virus sub-strains from human and avian influenza.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/04/150410113601.htm  Original web page at Science Daily

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* Falcons learn to hunt by chasing drones

The ancient sport of falconry is embracing high-tech hunting, with falconers using robots to train their birds. The move could help conservation efforts. Mascuch, an experienced falconer in Parma, Idaho, was nursing the bird back to health after she had suffered a broken wing. The quadcopter, which Mascuch had fitted with blade guards, was placed on the ground next to his falcon. She eyed it warily. As the motors started up, Mascuch distracted her from the noise with a snack. Soon the bird was up in the air, chasing the drone – and the half a quail dangling from it. Her owner is now a drone convert. “It’s easy to use, quick and very versatile,” says Mascuch. “If you have a bird that’s difficult to train, these tools make it easy.”

Drones have taken the ancient sport of falconry by storm over the past few years. Falconers train their birds to reach high altitudes, so that they can see across larger areas and are more likely to find prey. Traditionally, they have done this by rewarding the falcon whenever they happen to fly high. Some trainers tempt the birds upwards with bait attached to a kite or balloon. But drones offer more control over this process – they can make the bait fly where the trainer wants or hover, even in a stiff breeze.

“To the average person, it would seem like this great leap forward, but it’s really an evolution of what falconers have done for a long time,” says Mike Dupuy, a falconer in Pennsylvania who plans to incorporate drones into his training. “It’s a beautiful thing, it’s a new thing and I think we’re going to get a lot more of it.”

http://www.newscientist.com/  New Scientist

http://www.newscientist.com/article/mg22530132.600-falcons-learn-to-hunt-by-chasing-  drones.html#.VQ_D8lI5Bkg Original web page at New Scientist

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Cryptochrome protein helps birds navigate via magnetic field

Researchers have established that birds can sense the earth’s magnetic field and use it to orient themselves. How this internal compass works, though, remains poorly understood. Physicists at the University of Oxford are exploring one possible explanation: a magnetically sensitive protein called cryptochrome that mediates circadian rhythms in plants and animals. Blue or green light triggers electrons in the protein to produce pairs of radicals whose electron spins respond to magnetic fields. “As we vary the strength of the magnetic field, we can alter the progress of these photochemical reactions inside the protein,” said lead researcher Peter Hore, who will present his work during a talk at the American Physical Society’s March Meeting on Wednesday, March 4 in San Antonio, Texas. Behavioral experiments have shown that even subtle disruptions to the magnetic field can impact birds’ ability to navigate.

In a study led by Henrik Mouritsen, in collaboration with Hore, robins were placed in wooden huts on campus at the University of Oldenburg in Germany. Without supplementary visual cues like the sun’s position in the sky, the birds struggled to navigate. They only regained their ability to orient themselves when the huts were covered in aluminum sheeting and electrically grounded, blocking external oscillating electromagnetic noise but not the earth’s static magnetic field. The researchers concluded that even low-level electromagnetic noise in the frequency range blocked by the aluminum screens — probably coming from AM radio signals and electronic equipment running in buildings –somehow interfered with the urban robins’ magnetic orientation ability. Hore hopes that the behavioral findings in the field can inform his molecular-level work in the laboratory. “We would like to know how such extraordinarily weak radiofrequency fields could disrupt the function of an entire sensory system in a higher vertebrate.

Our feeling is that this is likely to provide key insights into the mechanism either of the magnetic compass sense or of some important process that interferes with the birds’ orientation behavior,” said Hore. One explanation is that the electromagnetic noise has quantum-level effects on cryptochrome’s performance. This would suggest that the radical pairs in cryptochrome preserve their quantum coherence for much longer than previously believed possible. Such a finding could have broader implications for physicists hoping to extend coherence for more efficient quantum computing. “Physicists are excited by the idea that quantum coherence could not just occur in a living cell, but could also have been optimized by evolution. There’s a possibility that lessons could be learned about how to preserve coherence for long periods of time,” said Hore.

http://www.sciencedaily.com/ Science Daily

http://www.sciencedaily.com/releases/2015/02/150227131003.htm Original web page at Science Daily