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Bacterial biofilms may play a role in lupus, research finds

Lupus, multiple sclerosis, and type-1 diabetes are among more than a score of diseases in which the immune system attacks the body. But why the immune system begins its misdirected assault has remained a mystery. Now, researchers have shown that bacterial communities known as biofilm play a role in the development of the autoimmune disease systemic lupus erythematosus — a discovery that may provide important clues about several autoimmune ailments.

Now, researchers at Temple University School of Medicine (TUSM) have shown that bacterial communities known as biofilm play a role in the development of the autoimmune disease systemic lupus erythematosus — a discovery that may provide important clues about several autoimmune ailments

A team led by TUSM researchers Çagla Tükel, PhD, and Stefania Gallucci, MD, show how bacterial biofilms found in the gut can provoke the onset of lupus in lupus-prone mice. The research is published in the current issue of the journal Immunity. Dr. Tükel is an Assistant Professor of Microbiology and Immunology at TUSM, and Dr. Gallucci is Associate Chair, Microbiology and Immunology, as well as an Associate Professor in Microbiology and Immunology at TUSM. Both are members of the Temple Autoimmunity Center.

“This work stresses the importance of considering infections as a possible trigger for lupus,” Dr. Gallucci said. “Very little was known about how biofilms interact with the immune system because most of the research has been looking at how biofilms protect bacteria, how they make bacteria resistant to antimicrobials such as antibiotics, but almost nothing was known about what biofilms do to the immune response,” she said.

 

Biofilm is a densely packed bacterial community that excretes proteins and other substances. Those substances form a matrix that protects the bacteria from antimicrobials, the immune system, and other stressors. Biofilms can occur in our guts, among the bacteria that help us digest. They exist as dental plaque, or arise in urinary tract infections. They also can find a home on human-made surfaces such as intravenous catheters. Central to the lupus story is a biofilm protein deposit called an amyloid. In the common gut bacteria E. coli, as well as the bacteria often responsible for severe gastrointestinal distress that accompanies food poisoning, Salmonella Typhimurium, amyloids are called curli because of their curly fiber-like appearance.

Also part of the biofilm is DNA excreted by bacteria. The Temple team discovered that when curli amyloids and DNA meet, they form remarkably durable bonds in the biofilm. When the researchers attempted to separate the DNA from these bonds using a variety of enzymes as well as chemicals, the curli wouldn’t let go. Curli-DNA complexes speed up the creation of the biofilm, the researchers learned. And the Temple researchers found it is also in this composite of curli-plus-DNA that autoimmune trouble appears to arise.

 

It’s long been known that infection is associated with lupus flares — a flare in lupus is when symptoms worsen. Indeed, infections play a role in between 20 percent and 55 percent of lupus patient mortality. Up to 23 percent of hospitalizations in lupus patients are due to infectious disease complications. Further, the bacteria Salmonella are more aggressive in lupus patients, with the ability to create potentially lethal complications.

The new research shows that the complexes formed from curli amyloid and DNA in the biofilms of both Salmonella and E. coli give rise to not only inflammation, but the self-attacking antibodies of lupus.

To demonstrate the role of biofilms in immune response, the researchers wanted to see how the sentinels of the immune system, called dendritic cells, reacted to a biofilm. The dendritic cells sent “tendrils” into the biofilm and ate up part of it to signal other molecules. Further, they produced large amounts of chemicals called proinflammatory cytokines. These cytokines are important in inciting the immune system to act. Among the cytokines was Type-1 interferon, known to be associated with lupus.

“I was super excited when I saw how activated the dendritic cells were on the biofilm ” Dr. Gallucci said. The levels of cytokines released when dendritic cells were exposed to curli-DNA complexes actually exceeded the most robust response known previously — the response to lipopolysaccharide (LPS).

To test if the immune response seen in the laboratory would be enough to induce autoimmunity and the attack on self that occurs in lupus, the researchers used mice that are prone to develop autoimmune disease. As is the case with many diseases, lupus is the result of a genetic propensity that lies dormant in the absence of an environmental trigger. The researchers wanted to see if the curli-DNA complexes could provide that trigger. They injected susceptible mice with the amyloid-DNA composites or a placebo. Within two weeks, the researchers found the kind of antibodies that attack “self,” known as autoantibodies. The autoantibodies, which target double-stranded DNA, are a diagnostic hallmark of lupus. The response was remarkably fast. It normally takes mice four to five months to develop autoantibodies.

Another strain of mice that do not develop lupus spontaneously but are genetically predisposed to autoimmunity also reacted to the curli-DNA composites with rapid production of autoantibodies. A third strain of mice with no propensity for any autoimmune disease, developed autoantibodies within two weeks of injection, but at lower levels than in the mice with a propensity toward lupus.

 

All mice developed the autoantibodies whether the curli-DNA composites came from Salmonella or from the kind of E. coli that’s found in a healthy digestive system. In fact, three of the four bacterial families that contain curli genes are found in the gut: Bacteroidetes, Proteobacteria, and Firmicutes, suggesting a possible source of vulnerability in susceptible patients. “How that happens, I think that will be the next level of our project,” Dr. Gallucci said. The research team is already looking at mouse models to see what may lead to the escape of curli-DNA complexes from the gut. Further, the team is collaborating with rheumatologist Dr. Roberto Caricchio, Director of the Temple Lupus Clinic, to see if the patients show signs of exposure to the curli-DNA complexes.

“The next step is to explore the mechanism of how these composites are stimulating autoimmunity,” Dr. Tükel said. “The beneficial bacteria found in our guts can cause problems when they cross the intestinal barrier and reach to places they shouldn’t be. Thus, besides infectious bacteria, a leaky gut could cause many problems. We are now starting to understand how the bacteria in our gut may trigger complex human diseases including lupus. So it’s critical for us to understand the biology of the bacterial communities and their interactions with the immune system.”

The research may offer clues to diseases involving amyloids, Dr. Tükel said. For instance, amyloid plaques in the brain are a signature of Alzheimer’s disease. Type-2 diabetes and Parkinson’s disease also feature amyloids. “Right now, we can only speculate,” she said. “Some reports suggested that antibiotic treatment may be changing the course of Alzheimer’s disease. Antibiotics are thought, in some cases, to slow the mental decline suggesting that bacterial infections, or a bacterial component, may be contributing to the disease. That could be a link, but for the moment, it’s only speculation.”

 

Understanding how biofilms trigger autoimmunity may ultimately lead to changes in patient treatment, Dr. Gallucci said. “So understanding how the biofilms affect flares could lead to a different treatment approach. Now, they give immune suppressive drugs. Maybe you want to do something else, like treat the underlying infection.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/07/150706154855.htm  Original web page at Science Daily

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The concept sounds like the stuff of science fiction: take a pill, and suddenly new tissues grow to replace damaged ones.

Researchers at Case Western Reserve and UT Southwestern Medical Center this week announced that they have taken significant steps toward turning this once-improbable idea into a vivid reality. In a study published in the June 12 edition of Science, they detail how a new drug repaired damage to the colon, liver and bone marrow in animal models — even going so far as to save the lives of mice who otherwise would have died in a bone marrow transplantation model.

“We are very excited,” said Sanford Markowitz, MD, PhD, the Ingalls Professor of Cancer Genetics at the university’s School of Medicine and a medical oncologist at University Hospitals Case Medical Center’s Seidman Cancer Center. “We have developed a drug that acts like a vitamin for tissue stem cells, stimulating their ability to repair tissues more quickly. The drug heals damage in multiple tissues, which suggests to us that it may have applications in treating many diseases.”

The institutions collaborating on this work next hope to develop the drug — now known as “SW033291” — for use in human patients. Because of the areas of initial success, they first would focus on individuals who are receiving bone marrow transplants, individuals with ulcerative colitis, and individuals having liver surgery. The goal for each is the same: to increase dramatically the chances of a more rapid and successful recovery.

The key to the drug’s potential involves a molecule the body produces that is known as prostaglandin E2, or PGE2. It is well established that PGE2 supports proliferation of many types of tissue stem cells. Markowitz and University of Kentucky Professor Hsin-Hsiung Tai earlier had demonstrated that a gene product found in all humans, 15-hydroxyprostaglandin dehydrogenase (15-PGDH), degrades and reduces the amount of PGE2 in the body.

Markowitz, also a Harrington Discovery Institute Scholar-Innovator, and James K.V. Willson, MD, a former Case Western Reserve colleague now at UT-Southwestern, hypothesized that inhibiting 15-PGDH would increase PGE2 in tissues. In so doing, it would promote and speed tissue healing. When experiments on mice genetically engineered to lack 15-PGDH proved them correct, the pair began searching for a way to inactivate 15-PGDH on a short-term basis.

The preliminary work began in test tubes. Yongyou Zhang, PhD, a Case Western Reserve research associate in Markowitz’s lab and a lead author on the study, developed a test where cells glowed when 15-PGDH levels changed. Zhang then traveled to UT Southwestern’s Harold C. Simmons Comprehensive Cancer Center, where Willson serves as director. Zhang and UT Southwestern researchers Bruce Posner, PhD, and Joseph Ready, PhD, collaborated to comb through the center’s library of 230,000 different chemicals. Ultimately they identified one chemical that they found inactivated 15-PGDH.

“The chemical, SW033291, acts in an incredibly potent way,” Markowitz said. “It can inactivate 15-PGDH when added at one part in 10 billion into a reaction mixture, which means it has promise to work as a drug.” A series of experiments showed that SW033291 could inactivate 15-PGDH in a test tube and inside a cell, and, most importantly, when injected into animal models. The third finding came through collaboration between Markowitz and Stanton L. Gerson, MD, director of the Case Comprehensive Cancer Center, UH Seidman Cancer Center, and the National Center for Regenerative Medicine, as well as the Asa and Patricia Shiverick-Jane Shiverick (Tripp) Professor of Hematological Oncology.

Case Western Reserve research associate Amar Desai, PhD, worked between the Markowitz and Gerson laboratories to determine the effect of SW033291 on mice that had received lethal doses of radiation and then received a partial bone marrow transplant. Without SW033291, the animals died. With it, they recovered.

From there, more detailed studies showed that mice given SW033291 recovered normal blood counts six days faster than mice that were transplanted without receiving SW033291. In addition, SW033291-treated mice showed faster recovery of neutrophils, platelets and red blood cells. Neutrophils battle infection, platelets prevent bleeding, and red blood cells deliver oxygen throughout the body.

In addition, Desai’s work showed that when SW033291 increases PGE2 in bone marrow, the body also begins to produce other materials that bone marrow stem cells need to survive. Finally, these benefits emerged without any adverse side effects, even at SW033291 doses much higher than would be required for 15-PGDH inhibition.

When investigators treated mice with other diseases, the SW033291 drug again accelerated tissue recovery. For example, the investigators teamed with Fabio Cominelli, MD, PhD, a Case Western Reserve Professor and Chief of the Division of Gastroenterology and Liver Disease, to study a mouse model of ulcerative colitis. SW033291 healed virtually all the ulcers in the animals’ colons and prevented colitis symptoms. In mice where two-thirds of their livers had been removed surgically, SW033291 accelerated regrowth of new liver nearly twice as fast as normally happens without medication

Because bone marrow, colon, and liver are significantly different tissues, the investigators believe the pathway by which SW033291 speeds tissue regeneration is likely to work as well for treating diseases of many other tissues of the body. However, the next stages of the research will concentrate on three diseases where SW033291 already shows promise to provide dramatic improvement.

In bone marrow transplants, for example, effects of SW033291 in accelerating tissue growth would provide the body the cells required to fight off the two most common and sometimes fatal complications, infection and bleeding. For those suffering the debilitating impact of colitis, accelerating tissue growth could heal colon ulcers more quickly, which in turn could allow patients to take lower dosages of other medications that treat colitis — some of which have serious side effects. Finally, the promise of tissue growth could increase survival rates for patients with liver cancer; in some cases today, physicians are unable to perform surgery because the amount of the liver to be removed would be so great as to pose severe risk to the patient. But having a drug to accelerate the liver’s regrowth could make surgery a viable option.

The team’s next step will be to complete studies showing safety of SW033291-related compounds in larger animals, a required part of the pathway to secure approval from the U.S. Food and Drug Administration for trials in humans. If the drugs prove safe and effective in those clinical trials, they could then become available for general use by physicians. Investigators hope to partner with pharmaceutical companies to be able to start human trials within three years.

“These are thrilling times for us as researchers, and it is also an exciting time for Case Western Reserve,” Markowitz said. “In Cleveland, there has been a major effort in the last two to three years to figure out how all our institutions can together work to develop drugs. This discovery is really something we should celebrate. It helps put us on the map as a place where new drugs get invented.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150611144438.htm  Original web page at Science Daily

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Restoring natural immunity against cancers

Scientists have successfully increased the infiltration of immune cells into tumors, thus inducing the immune system to block tumor growth. In a new article, the scientists show that, in combination with existing immunotherapies, this process efficiently destroys cancer cells. Scientists at the Institut Pasteur and Inserm have successfully increased the infiltration of immune cells into tumors, thus inducing the immune system to block tumor growth. In an article published in Nature Immunology, the scientists show that, in combination with existing immunotherapies, this process efficiently destroys cancer cells.

Chemokines are small molecules that can attract immune cells towards inflammatory tissues, acting for example during tumor development or upon infection, in order to support migration of lymphocytes into diseased tissues. However, these molecules may be degraded by enzymes, a process that limits the influx of immune cells. For example, the chemokine CXCL10, which induces the recruitment of T lymphocytes into pathological tissues, is rapidly degraded by the enzyme dipeptidylpeptidase 4 (DPP4).

The Dendritic Cell Immunobiology Unit, led by Matthew Albert (Institut Pasteur and Inserm), had previously shown that increased levels of DPP4 and the degraded form of CXCL10 in hepatitis C patients correlate with patients’ inability to respond to interferon treatment. Following these results, the scientists predicted and have now confirmed that inhibiting this enzyme could improve the efficacy of immune responses, in particular antitumor responses.

In a recently published study, Rosa Barreira da Silva, Matthew Albert and their colleagues showed that oral administration of a specific DPP4 inhibitor (sitagliptin) slows the development of several types of cancer in mice. In addition, the authors demonstrated that DPP4 inhibition increased the infiltration of T lymphocytes into tumors, and that the combination of this innovative treatment with existing immunotherapies eradicated the tumor.

Since health authorities have already approved DPP4 inhibitors for the treatment of type 2 diabetes, the conclusions drawn from these studies may quickly translate into clinical studies in humans. In fact, Matthew Albert’s team, in collaboration with clinical colleagues, has already submitted a proposal for a phase I clinical trial, to evaluate the impact of sitagliptin treatment in patients with hepatocellular carcinoma.

The cross-disciplinary nature of the projects undertaken by the teams at the Institut Pasteur and Inserm, along with collaboration between scientists and clinicians, allows clinical observations and scientific discoveries to be rapidly applied for the management of human disease.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/06/150617135414.htm  Original web page at Science Daily

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Antibody shows promise as treatment for HIV

Antibody treatment reduced levels of HIV in study participants for 28 days. Treating HIV with an antibody can reduce the levels of the virus in people’s bodies — at least temporarily, scientists report on 8 April in Nature. The approach, called passive immunization, involves infusing antibodies into a person’s blood. Several trials are under way in humans, and researchers hope that the approach could help to prevent, treat or even cure HIV. The work is a milestone towards those goals, says Anthony Fauci, director of the US National Institute of Allergy and Infectious Diseases in Bethesda, Maryland. “This is an early study, but it’s a study with some impressive results,” he says. Researchers tested four different doses of an HIV antibody called 3BNC117 in 29 people in the United States and Germany. Seventeen of the participants had HIV, and 15 of those were not taking antiretroviral (ARV) drugs at the time of the study. One infusion of the highest dose of antibody, given to 8 participants, cut the amount of virus in their blood by between 8 and 250 times for 28 days. But much work remains to determine whether the approach can produce longer-lasting effects and whether it is practical for clinical use.

Previous studies have shown that passive immunization can reduce levels of HIV in the blood of monkeys and mice, although the approach has not worked as well in humans. But the antibodies used in those earlier clinical tests were of an older generation that could not neutralize many different strains of HIV. Researchers have spent much of the past decade trying to find ‘broadly neutralizing’ antibodies that are more widely effective against the virus, and the 3BNC117 antibody belongs to this class. The price of treatment with this approach is also a concern. Antibodies can cost thousands of dollars for each course of treatment, and the majority of people with HIV are in low- and middle-income countries, some of which are already fighting drug companies over the high cost of antibody medicines. “The practicality, utility and efficacy of this approach are hugely open questions,” says Mitchell Warren, executive director of AVAC, a global organization that advocates HIV prevention and is headquartered in New York City.

Even with improved antibodies, researchers still face a vexing problem: HIV mutates quickly as it replicates in the human body, which can reduce the effectiveness of treatments over time. The study’s authors found that this was true for the single antibody that they tested. In two people who received the highest dose of 3BNC117, the antibody became roughly 80% less effective at neutralizing HIV after 28 days of treatment — probably because the virus changed shape to evade the antibody. As a result, it is unlikely that a single antibody alone could treat people who have HIV, says the study’s lead author, Michel Nussenzweig, an infectious-disease physician and immunologist at the Rockefeller University in New York. Instead, therapies would use combinations of antibodies. Nussenzweig’s group has produced a second HIV antibody and hopes to test it alone and in combination with 3BNC117 this year.

“The goal is a once-a-year shot for prevention and a combination approach for cure,” he says, adding that this immunotherapy approach to treating HIV would resemble treatments now used against cancer. Relying on combinations of antibodies would raise the costs of passive-immunization treatments for HIV. But Warren says that this is not necessarily a deal-breaker, noting that patient advocacy and concessions by drug companies have helped to reduce the high cost of ARV medications over the past two decades. “Some people would have said 10–15 years ago that ARVs were not going to be affordable, either,” he adds.

Nature doi:10.1038/nature.2015.17260

http://www.nature.com/news/index.html  Nature

http://www.nature.com/news/antibody-shows-promise-as-treatment-for-hiv-1.17260  Original web page at Nature

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Ophthalmologists uncover autoimmune process that causes rejection of secondary corneal transplants

UT Southwestern Medical Center ophthalmologists have identified an important cause of why secondary corneal transplants are rejected at triple the rate of first-time corneal transplants.

The cornea — the most frequently transplanted solid tissue — has a first-time transplantation success rate of about 90 percent. But second corneal transplants undergo a rejection rate three times that of first transplants. “Understanding why these rejections occur is important to further improving the ways in which corneal transplants are performed,” said the study’s senior author Dr. Jerry Niederkorn, Professor and Vice Chair of Research of Ophthalmology, and Professor of Microbiology. “In the future, ophthalmologists may be able to implement processes, and eventually prescribe medications, that can lower the rates of rejection.”

More than 40,000 transplants are performed annually to replace the cornea, the clear outer lens at the front of the eye, with tissue from a donor. Most corneal transplants are done to correct severe visual impairments caused by keratoconus, a condition in which the normally dome-shaped cornea progressively thins and becomes cone-shaped, according to the American Academy of Ophthalmology. The high success rate of first-time corneal transplants is attributed to a process called immune privilege, which allows transplants to be successfully performed without matching the donor tissue to that of the recipient, as is required for organ transplants. Although immune privilege accounts for the initial high success rate, it can occasionally fail, leading to the rejection of corneal transplants in approximately 10 percent of patients. In patients requiring a second transplant, the incidence of immune rejection rises to almost 70 percent.

“We believe that this loss of immune privilege is similar to an alarm that signals the immune system of potential infection, which results in a full blown immune response at the expense of the corneal transplant,” said Dr. Niederkorn, who holds the Royal C. Miller Chair in Age-Related Macular Degeneration Research and the George A. and Nancy P. Shutt Professorship in Medical Science. Researchers studying mouse models discovered that after the first corneal transplant is accepted, T regulatory cells prevent other types of immune cells from attacking and rejecting the transplant. But severing corneal nerves, which occurs during the first transplantation procedure, releases high levels of the neuropeptide Substance P. The resulting high Substance P levels disable the T regulatory cells needed for acceptance of subsequent corneal transplants. This inactivation results in rejection of more than 90 percent of the second corneal transplants in mice and helps to explain the curiously high risk for corneal graft rejection in patients who receive a second corneal transplant.

Researchers found that the high Substance P levels can be blocked with drugs to restore the eye’s immune privilege and promote the acceptance of second corneal transplants. The study, which appears in the American Journal of Transplantation, is supported by grants from the National Institutes of Health and Research to Prevent Blindness. Future research will focus on pharmacological strategies for restoring T regulatory cell function and promoting the survival of second corneal transplants. Other studies will determine if these findings can be extended to enhancing the immune response to cancer.

http://www.sciencedaily.com/   Science Daily

http://www.sciencedaily.com/releases/2015/04/150416192710.htm  Original web page at Science Daily

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Benefits of immunotherapy, cancer-targeted treatment in triple combo drug for melanoma

Results of a new study by UCLA researchers has found that a groundbreaking new triple combination therapy shows promising signs of more effectively controlling advanced melanoma than previous BRAF + MEK inhibitor or BRAF inhibitor + immunotherapy combos alone, and with increased immune response and fewer side effects. An estimated 70,000 new cases of metastatic melanoma are diagnosed each year in the United States, and of those 8,000 will die of the disease. About 50 percent of these men and women (or 35,000 a year) have a mutated protein called a BRAF mutation, which in most cases allows melanoma to eventually build up a resistance to many drug therapies.

In the new study led by UCLA Jonsson Comprehensive Cancer Center member Dr. Antoni Ribas and colleague Dr. Siwen Hu-Lieskovan, UCLA scientists combined targeted therapies utilizing a BRAF inhibitor (dabrafenib) and MEK inhibitor (trametinib) with immunotherapy. The three together are shown to be more effective treatments by sensitizing the patients’ own immune system to enhance immunotherapy, and reduce the probability of the melanoma eventually developing resistance. This is a significant advance compared to previous drug combination findings, in which a combined BRAF inhibitor (vemurafenib) with immunotherapy (ipilimumab) caused serious liver toxicity in some patients, and the targeted therapies (BRAF and/or MEK inhibitors) became less effective and reactivated cancer cell growth.

“The two drug combination of BRAF and MEK inhibitors works synergistically and decreases the side effects of the BRAF inhibitor or normal cells. We reasoned that this combo would allow us to synergize with immunotherapy without increasing toxicities,” said Ribas, a professor of hematology and oncology. “We have made incredible progress in the last three years of treating advanced melanoma, with six new drug therapies approved by the FDA. Half are immunotherapies and the other half are BRAF or MEK inhibitors. The next step is to figure out how to rationally combine them and merge their benefits in the clinic.” “The triple combination of targeted therapies BRAF (dabrafinib) and MEK (trametinib) inhibitors with immunotherapy (tumor antigen-specific adoptive cell transfer or anti-PD1 antibody) makes immune therapy more effective at killing cancerous tumors and causes less toxicity ” said Hu-Lieskovan, a UCLA clinical instructor of hematology and oncology.

“We’re trying to take advantage of the high response rate of the targeted therapy and durability of the immune therapy to induce a response that lasts in the majority of patients.” Ribas and Hu-Lieskovan have opened two clinical trials to test the effectiveness of the triple combination therapy in advanced melanoma patients. The first reported findings will be presented at the American Society of Clinical Oncology (ASCO) annual meeting in May 2015. The study will be available online March 18th in the journal Science Translational Medicine.

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http://www.sciencedaily.com/releases/2015/03/150318144334.htm  Original web page at Science Daily

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How rare antibody targets Ebola and Marburg virus

Now scientists at The Scripps Research Institute (TSRI) have captured the first images showing how immune molecules bind to a site on the surface of Marburg virus. The images are like enemy reconnaissance, showing scientists how to target the virus’s weak spots with future treatments. The research team is also the first to describe an antibody that binds to both Marburg and Ebola viruses, paving the way for new antibody treatments to fight an entire family of viruses. “These cross-reactive antibodies are a straightforward route to a therapeutic,” said TSRI Professor Erica Ollmann Saphire, senior author of new study. “You could use these antibodies directly against Marburg virus or — with a bit more engineering — use them to also target Ebola virus.” Their findings were published February 26 in the journal Cell. Marburg virus is spread to humans by bats and can cause massive hemorrhaging and organ failure, just like Ebola virus. In 2005, a Marburg outbreak in Angola killed 329 people, mostly children and health-care workers. Some worry Marburg could cause an even bigger outbreak in the future. “Marburg is just as likely as Ebola to migrate to a densely populated area,” said Saphire.

The new study focuses on an antibody discovered in the blood of a Marburg survivor. By studying how the antibody binds to the virus, the researchers hoped to find new points of attack on Marburg’s surface. The project was a six-year effort in the Saphire lab. Takao Hashiguchi, a former TSRI research associate, and Marnie Fusco, a TSRI research assistant, figured out how to grow crystals of the antibody attached to its viral target. This crystal was then exposed to X-ray diffraction at the Photon Factory synchrotron in Tsukuba, Japan, revealing its shape in three dimensions. The team’s work showed how the antibody attaches to Marburg virus, blocking the virus’s ability to bind to a receptor and get its genetic material into human cells. This was also the first time that Marburg’s glycoprotein had been seen in the form it takes as it infects cells. Marburg and Ebola viruses enter cells the same way, so the researchers wondered if the antibody could also inactivate Ebola virus by binding to the same site. The work of TSRI Staff Scientist Zachary Bornholdt showed that it did bind to Ebola — and provided a crystal structure of the same antibody bound to Ebola virus. The crystal structure also revealed why this cross-reactive antibody was found in a Marburg survivor and not an Ebola survivor, even though the antibody reacts with both viruses. The key was in the flexible, carbohydrate-rich coating on the surface proteins of both viruses.

With the help of researchers at the Lawrence Berkeley National Laboratory, the team used a technique called small-angle X-ray scattering to study the carbohydrate-cloaked versions of the Ebola and Marburg proteins. Their images showed that the carbohydrate-rich regions had different shapes and exposed different surfaces underneath, allowing the body to create an antibody against this exposed region only in Marburg. The new study was published in Cell with a companion paper, led by researcher James E. Crowe Jr. at Vanderbilt University and co-authored by TSRI Associate Professor Andrew Ward and C. Daniel Murin, a TSRI graduate student. This paper shows low-resolution structures of other antibodies with the potential to bind to the same vulnerable receptor on Marburg virus. Ward said the two studies give him hope that a cross-reactive antibody treatment could someday be designed to combat related viruses, such as Sudan virus and Bundibugyo virus, which share the receptor. “We need to be prepared for future outbreaks,” said Ward. “You don’t know which virus is going to break out next,” said Saphire. “This gives us something to work with.”

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http://www.sciencedaily.com/releases/2015/02/150226122328.htm  Original web page at Science Daily

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Link between powerful gene regulatory elements and autoimmune diseases

Investigators with the National Institutes of Health have discovered the genomic switches of a blood cell key to regulating the human immune system. The findings, published in Nature today, open the door to new research and development in drugs and personalized medicine to help those with autoimmune disorders such as inflammatory bowel disease or rheumatoid arthritis. The senior author of the paper, John J. O’Shea, M.D., is the scientific director at NIH’s National Institute of Arthritis and Musculoskeletal and Skin Diseases. The lead author, Golnaz Vahedi, Ph.D., is a postdoctoral fellow in Dr. O’Shea’s lab in the Molecular Immunology and Inflammation Branch. The study was performed in collaboration with investigators led by NIH Director, Francis S. Collins, M.D., Ph.D., in the Medical Genomics and Metabolic Genetics Branch at the National Human Genome Research Institute.

Autoimmune diseases occur when the immune system mistakenly attacks its own cells, causing inflammation. Different tissues are affected in different diseases, for example, the joints become swollen and inflamed in rheumatoid arthritis, and the brain and spinal cord are damaged in multiple sclerosis. The causes of these diseases are not well understood, but scientists believe that they have a genetic component because they often run in families. “We now know more about the genetics of autoimmune diseases,” said NIAMS Director Stephen I. Katz, M.D., Ph.D. “Knowledge of the genetic risk factors helps us assess a person’s susceptibility to disease. With further research on the associated biological mechanisms, it could eventually enable physicians to tailor treatments to each individual.” Identifying autoimmune disease susceptibility genes can be a challenge because in most cases a complex mix of genetic and environmental factors is involved. Genetic studies have shown that people with autoimmune diseases possess unique genetic variants, but most of the alterations are found in regions of the DNA that do not carry genes. Scientists have suspected that the variants are in DNA elements called enhancers, which act like switches to control gene activities.

Dr. O’Shea’s team wondered if the alterations might lie in a newly discovered type of enhancer called a super-enhancer (SE). Earlier work in the laboratory of Dr. Collins and others had shown that SEs are especially powerful switches, and that they control genes important for the function and identity of each individual cell type. In addition, a large number of disease-associated genetic alterations were found to fall within SEs, suggesting that disease occurs when these switches malfunction. Dr. O’Shea’s team began by searching for SEs in T cells, immune cells known to play an important role in rheumatoid arthritis. They reasoned that SEs could serve as signposts to steer them toward potential genetic risk factors for the disease. “Rather than starting off by looking at genes that we already knew were important in T cells, we took an unbiased approach,” said Dr. O’Shea. “From the locations of their super-enhancers, T cells are telling us where in the genome these cells invest their assets–their key proteins–and thereby where we are most likely to find genetic alterations that confer disease susceptibility.” Using genomic techniques, the researchers combed the T cell genome for regions that are particularly accessible to proteins, a hallmark of DNA segments that carry SEs. They identified several hundred, and further analysis showed that they largely control the activities of genes that encode cytokines and cytokine receptors. These types of molecules are important for T cell function because they enable them to communicate with other cells and to mount an immune response.

But the researchers’ most striking observation was that a large fraction of previously identified alterations associated with rheumatoid arthritis and other autoimmune diseases localized to these T cell SEs. Additional experiments provided further evidence for a central role for SEs in rheumatoid arthritis. When the scientists exposed human T cells to a drug used to treat the disease, tofacitinib, the activities of genes controlled by SEs were profoundly affected compared to other genes without SEs. This result suggests that tofacitinib may bring about its therapeutic effects in part by acting on SEs to alter the activities of important T cell genes. “Three types of data–the genetics of rheumatoid arthritis, a genomic feature of T cells, and the pharmacological effects of a rheumatoid arthritis drug–are all pointing to the importance of super-enhancers,” said Dr. Vahedi. “These regions are where we plan to search for insights into the mechanisms that underlie rheumatoid arthritis and other autoimmune diseases, and for novel therapeutic targets for these conditions.”

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http://www.sciencedaily.com/releases/2015/02/150216131144.htm Original web page at Science Daily

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Neurogeneticists harness immune cells to clear Alzheimer’s associated plaques

The study, which appears in the Feb. 4 edition of the peer-reviewed scientific journal Neuron, identifies a promising avenue for treating a disease that the Alzheimer’s Association projects will affect 16 million Americans over age 65 by 2050. “Alzheimer’s disease is the public health crisis of our time, and effective treatment does not yet exist,” said Terrence Town, PhD, professor of physiology and biophysics at the Keck School of Medicine of USC and the study’s senior author. “Our study shows that ‘rebalancing’ the immune response to wipe away toxic plaques from the brain may bring new hope for a safe and effective treatment for this devastating illness of the mind.” Alzheimer’s disease is an irreversible, progressive brain disease that causes problems with memory, thinking and behavior. Affecting more than 5 million Americans today, Alzheimer’s is the most common type of dementia, a general term for loss of memory and other mental abilities. Brains with Alzheimer’s disease show build-up of a sticky plaque — made of a protein called beta-amyloid — that induces memory loss. When afflicted with Alzheimer’s, the immune system, which typically rids the body of toxic substances, becomes imbalanced and inefficient at clearing those plaques. In the Neuron study, Town and his team used genetically modified mice to show that blocking a substance called interleukin-10 activates an immune response to clear the brain of the beta-amyloid plaques to restore memory loss and brain cell damage. Alzheimer’s-afflicted mice in which the immune cells were activated behaved more like mice without the disease in various learning and memory tests. Future studies will test the effectiveness of drugs that target interleukin-10 in rats that the scientists have genetically modified to develop Alzheimer’s disease.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2015/02/150205095231.htm  Original web page at Science Daily

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Immunology: Fifty years of B lymphocytes

Alexander D. Gitlin and Michel C. Nussenzweig reflect on the discovery of two lineages of adaptive immune cells, and how it influenced vaccination, cancer therapy and the development of a class of antibody-based drugs. At the time, the central question in immunology was how vertebrates tailor their defences to bacteria and viruses, whose chemical structures show nearly unlimited diversity. Within two years of joining Good’s laboratory, Cooper had made a discovery about the cells that accomplish this task — lymphocytes — that proved essential to cracking the mystery, and ultimately to unifying the camps of his field. Fifty years ago this week, Good, Cooper and their colleague Raymond Peterson published a paper in this journal revealing that there are two types of lymphocyte. The insight shaped the course of modern immunology and influenced the study and care of immunodeficiency conditions, cancers of the immune system and the development of monoclonal antibodies — powerful research tools and therapeutics. In the 1960s, one camp of immunologists dealt mainly in chemical terms and had by then made considerable progress. This group had discovered that antibody molecules are proteins with two binding sites that recognize an extraordinary range of foreign molecules (antigens), even synthetic ones; and that antibodies are composed of two heavy and two light chains, with amino acids that vary at one end (the N terminus) but that are constant at the other end (the C terminus). The second camp dealt with immunology at the cellular and whole-organism level. Here, the clonal-selection theory, which hypothesized that lymphocytes are diverse and that each is unique, or clonal, was becoming increasingly accepted. Each cell carries a unique surface receptor that, when bound by antigen, triggers the proliferation of that clone. This theory was developed in the late 1950s by Frank Macfarlane Burnet at the Walter and Eliza Hall Institute (WEHI) of Medical Research in Melbourne, Australia, and David Talmage at the University of Chicago in Illinois. It gave immunology a conceptual framework, yet proof of its existence and its workings remained elusive. In 1961, Jacques Miller, also at the WEHI, demonstrated that a mouse with its thymus removed did not reject skin grafts from different strains of mice, as the animals normally would. This suggested that the thymus was a crucial source of cells that mediate phenomena such as rejection, but his experiments were not universally accepted. At that time, antibodies were thought to derive only from lymphocytes (through plasma cells). But immunologists did not know whether and how the lymphocytes that produced antibodies and those involved in graft rejection were related. It was in this context that Cooper, a paediatrician and clinical immunologist, made a set of clinical observations that were an early clue to the existence of two lymphocyte lineages. People with Wiskott–Aldrich syndrome, a disorder linked to the X chromosome, developed rampant herpes viral lesions associated with defective immunity. Yet these people had high levels of antibodies. By contrast, boys with the inherited immunodeficiency X-linked agammaglobulinaemia could control such viral infections even though they lacked antibody responses. This hinted that antibody-producing lymphocytes and thymus-derived lymphocytes that reject grafts (as in Miller’s mouse experiments) might be two different things. Cooper was one of the few immunologists who found clues to this paradox in a 1956 Poultry Science report. It recounted an ‘accidental’ finding about the bursa of Fabricius, an organ unique to birds that at the time was thought to have a hormonal role in growth and development. The authors, Bruce Glick and his colleagues, wrote of their “suspicion regarding the importance of the bursa in antibody production”. To study the role of the organ, Glick and his colleagues used chickens that had had their bursae removed for an unrelated experiment. To the researchers’ surprise, these chickens showed remarkably poor antibody production. Good and Cooper decided to revisit the role of the bursa and the thymus in chickens. Up until that point, organ-removal studies in chickens had yielded conflicting results. Cooper reasoned that these differences could have arisen because some chickens might have developed immune cells before their organs were taken out. His solution was to irradiate hatchlings a day after removing the organs, which eliminated any cells generated by a chick’s thymus or bursa before hatching. These chicks would thus reveal the roles that these organs have in immune development. The result, published in Nature on 9 January 1965, was spectacular. Irradiated chickens with no bursae produced no antibodies when injected with either bovine serum albumin, a protein derived from cattle, or the bacterium Brucella abortus. Serum from the birds completely lacked the major antibody classes. Yet the region of the white pulp in the spleen that is dependent on the thymus was intact. The dramatic phenotype was highly reminiscent of that of patients with X-linked agammaglobulinaemia. The next year, Cooper and his colleagues extended their seminal study in an important paper published in the Journal of Experimental Medicine. They used their irradiated chickens — without thymus and bursa — to elucidate the different functions of the immune cells produced by the two organs. They found that B (bursa-derived) cells are required for antibody responses, whereas T (thymus-derived) cells mediate delayed-type hypersensitivity reactions, graft-versus-host rejection and skin-graft rejection — all functions of cellular immunity.

The explanatory power of the two-lymphocyte model for immunodeficiency diseases was immense. Because people with X-linked agammaglobulinaemia are deficient in antibody production but not in cellular immunity, their disease was probably due to a deficiency in B-cell development only. By contrast, the Swiss-type agammaglobulinaemia, in which both cellular and antibody-based immunity are severely compromised, was likely to be caused by a deficiency in a precursor cell common to both T and B lineages. Not surprisingly, clinicians were more receptive to Cooper’s findings than were basic immunologists. Next, the most important quest for Cooper was to find an organ in mammals equivalent to the bursa. Without it, the relevance and generality of his findings remained controversial for nearly another decade. Scientists would often ask Cooper, “Where is the bursa equivalent this year, Max?” Finding the equivalent organ to the bursa in mammals proved difficult. Initially, Cooper and his colleagues suspected that intestinal tissue was the source of B cells; they expended enormous effort on this dead end. The answer finally came in 1974, when Cooper, together with Martin Raff and John Owen at University College London, cultured mouse fetal liver cells from day 14 of gestation. After four to seven days in culture, B cells were generated. At the same time, groups led by Gustav Nossal at the WEHI and Pierre Vassalli at the University of Geneva, Switzerland, made similar findings, using mouse bone marrow. In other words, the haematopoietic, or blood-forming, tissues serve the same function in mammals as the bursa in chickens. By the late 1970s, this understanding of the divergent lymphocyte lineages started to change the treatment of leukaemias and lymphomas. The cells of origin of these tumours could now be used to classify the cancers and to tailor therapies. Thus, acute lymphoblastic leukaemias could be B-cell- or T-cell-derived or neither; non-Hodgkin’s and Burkitt’s lymphomas are B-cell-derived. The effectiveness of various therapies for these cancers often dovetailed with their classification

Among the biggest impacts of B-cell biology was the invention of hybridomas — immortal antibody-producing cell lines. In 1975, Georges Köhler and César Milstein at the MRC Laboratory of Molecular Biology in Cambridge, UK, reported that they had fused B cells with a myeloma cell line. The resulting hybrid cell continuously produced its specific antibody. This was the birth of monoclonal-antibody technology, garnering Köhler, Milstein and Niels Jerne the 1984 Nobel Prize in Physiology or Medicine. The effect of this accomplishment is difficult to overstate. In the ensuing years, monoclonal antibodies permeated all of experimental biology. These molecules are potent and specific reagents that can be used to identify, isolate and perturb nearly any molecule or cell of interest. Clinically, monoclonal antibodies have become some of the most powerful diagnostics and therapeutics. “Understanding of the divergent lymphocyte lineages started to change the treatment of leukaemias and lymphomas.” Cooper’s discovery also set the stage for answering the fundamental question of clonal-selection theory: how is clonal diversity generated? The elegant molecular solution to this problem was elucidated by Susumu Tonegawa in 1976. B cells assemble a diverse set of antibodies by combining a set of three types of gene segment from a large pool of potential segments. Finally, the antibodies for which so much had been elucidated at the chemical level were now understood at the genetic, cellular and organismal levels. By the mid-1980s, the clonal nature of the T-cell system had also been explained. Through their discovery of the B and T cell systems, Cooper and his colleagues set in motion a series of landmark findings that united the chemical and cellular camps of the discipline. Key questions remain in B-cell biology. In particular, there are major unmet needs in vaccine development for HIV, influenza and many other infectious agents. Understanding how B cells are selected to differentiate into long-lived cells that provide protection from infection will guide us where empirical approaches have failed. As these discoveries continue to affect human health, it remains important to remember their origins in an experiment performed 50 years ago, by Cooper, in chickens.

Nature 517, 139–141 (08 January 2015) doi:10.1038/517139a

http://www.nature.com/news/index.html  Nature

http://www.nature.com/news/immunology-fifty-years-of-b-lymphocytes-1.16653  Original web page at Nature

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Immune cells boost cancer survival from months to years

Therapies that make use of a patient’s own T cells, a component of the immune system, are showing promise in the clinic. When immunologist Michel Sadelain launched his first trial of genetically engineered, cancer-fighting T cells in 2007, he struggled to find patients willing to participate. Studies in mice suggested that the approach — isolating and engineering some of a patient’s T cells to recognize cancer and then injecting them back — could work. But Sadelain did not blame colleagues for refusing to refer patients. “It does sound like science fiction,” he says. “I’ve been thinking about this for 25 years, and I still say to myself, ‘What a crazy idea’.” Since then, early results from Sadelain’s and other groups have shown that his ‘crazy idea’ can wipe out all signs of leukaemia in some patients for whom conventional treatment has failed. And today, his group at the Memorial Sloan Kettering Cancer Center in New York City struggles to accommodate the many people who ask to be included in trials of the therapy, known as adoptive T-cell transfer. At the American Society of Hematology (ASH) meeting held in San Francisco, California, on 6–9 December, attendees heard dozens of talks and poster presentations on the promise of engineered T cells — commonly called CAR (chimaeric antigen receptor) T cells — for treating leukaemias and lymphomas. The field has been marred by concerns over safety, the difficulties of manufacturing personalized T-cell therapies on a large scale, and how regulators will view the unusual and complicated treatment. But those fears have been quelled for some former sceptics by data showing years of survival in patients who once had just months to live. “The numbers are pretty stunning,” says Joseph Hedden, an analyst for the London-based market-research firm Datamonitor Healthcare. “Companies have clearly decided that it’s worth the pitfalls of how much this therapy is going to cost to develop.” At least five major pharmaceutical companies have invested in developing CAR-T-cell therapy over the past three years. Such interest from industry is a dramatic turn for a field that once consisted of a handful of academic medical centres. Small biotechnology firms have also sprung up to develop CAR T cells, including Kite Pharmaceuticals of Santa Monica, California, which raised US$127.5 million when it went public in June. And investors pumped $310 million into another CAR-T-cell company, Juno Therapeutics of Seattle, Washington, this year. “There is no doubt there has been a shift,” says Juno chief executive Hans Bishop. Most of these efforts focus on killing the cancerous, antibody-producing B cells behind some leukaemias and lymphomas. Researchers do this by engineering T cells to recognize a protein on the surface of most B cells — CD19 — and attacking cells that display it. Finding proteins that are expressed only on cancer cells can be difficult, and CD19 represents a compromise: the treatment sometimes wipes out all B cells, cancerous and healthy alike, but patients can survive without them. At the ASH meeting, Sadelain and his colleagues reported that this approach left no signs of cancer in all six patients with lymphoma who were enrolled in one trial. In another presentation, immunologist Carl June of the University of Pennsylvania in Philadelphia showed that targeting CD19 reduced cancer burden in 9 of 23 patients with chronic lymphocytic leukaemia. In a more aggressive disease called acute lymphoblastic leukaemia, 27 of 30 patients had no signs of cancer after therapy and the CAR T cells remained in their blood two years later.

But studies also highlight the risks of revving up immune responses. In April, at least five CAR-T-cell trials were halted after a series of patient deaths linked to unusually high levels of a protein called interleukin-6, which promotes inflammation, as well as other inflammatory molecules. Interleukin-6 is part of the body’s normal response to infection. But the intense immune onslaught launched by CAR T cells can send interleukin-6 levels soaring. The trials resumed after investigators adjusted their protocols to better monitor and treat the problem. These safety risks, as well as the difficulty of manufacturing CAR T cells, are still putting many drug companies off, says Andrew Baum, the London-based head of global health-care research for Citi, an investment bank headquartered in New York City. “The bulk of the multinationals are standing back and watching, rather than getting engaged here,” he says. When CAR T cells do reach the market, they will not be cheap. Baum says that some sponsors are tentatively planning to price their therapies higher than bone-marrow transplants, which can exceed $500,000. The cost may be so high, he says, that companies are forced to set up a reimbursement scheme in which they are paid only when a patient benefits from the treatment. Baum estimates that peak sales of CAR-T-cell therapies will reach $10 billion annually, although that amount will depend on what competing therapies emerge and whether the treatment can be extended to other cancers. For now, Sadelain, a scientific founder of Juno Therapeutics, hopes that the attention from industry will spur the field. He remembers his postdoc days, when he struggled to insert genes into T cells and colleagues asked him why he was bothering. “We’ve never had this kind of investment in the field before,” he says. “It’s hard to believe — sometimes I still pinch myself.”

Nature 516, 156 (11 December 2014) doi:10.1038/516156a

http://www.nature.com/news/index.html  Nature

http://www.nature.com/news/immune-cells-boost-cancer-survival-from-months-to-years-1.16519 Original web page at Nature

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Taming the inflammatory response in kidney dialysis

Frequent kidney dialysis is essential for the approximately 350,000 end-stage renal disease (ESRD) patients in the United States. But it can also cause systemic inflammation, leading to complications such as cardiovascular disease and anemia, and patients who rely on the therapy have a five-year survival rate of only 35 percent. Such inflammation can be triggered when the complement cascade, part of the body’s innate immune system, is inadvertently activated by modern polymer-based dialysis blood filters. New work by Penn researchers has found an effective way to avoid these problems by temporarily suppressing complement during dialysis. Their work appears online in Immunobiology ahead of print. Over the past several years, lead author John Lambris, PhD, the Dr. Ralph and Sallie Weaver Professor of Research Medicine, Perelman School of Medicine at the University of Pennsylvania, and his colleagues have developed small molecule versions of the drug compstatin, which inhibits a component of the complement immune response called C3. Lambris explains that this next-generation compound, called Cp40, “is a small peptide similar to cyclosporine in many aspects, however it uses a different mechanism of action.” Previous studies by Lambris and his team, in which modern polymer-based hemodialysis filters were perfused with human blood, showed significant complement activation and an increase in inflammatory biomarkers. This response could be suppressed using compstatin, suggesting that it might be used in dialysis to decrease the inflammatory response side effect. The new study took place in non-human primates to validate Cp40’s complement-inhibiting properties in whole animals. Even after undergoing a single session of dialysis using a pediatric hemodialysis filter with high biocompatibility, healthy animals showed strong complement activation with 5 percent of their C3 being converted to a form that can trigger inflammation and stimulate the immune system. “This is a huge amount of activation because hemodialysis patients go every two or three days, three times a week, for treatment,” says Lambris. Such repetitive complement activation may create a cytokine boost in humans that could fuel the chronic inflammatory response in renal disease patients. When a single dose of the Cp40 compound was administered, the animals displayed a complete suppression of complement, as indicated by C3 activation levels. A major advantage of this new approach is that it’s short-term: “The treatment is only for the time of hemodialysis,” Lambris explains. “It’s not a lasting inhibition. You start hemodialysis, you give the compound, and you inhibit during hemodialysis. After the procedure, the complement system quickly regains its full activity.” This avoids potential concerns about adverse effects caused by long-term complement suppression. Cp40 can also be manufactured at relatively low cost, easing the already-high financial burden of maintenance dialysis for ESRD patients. Study co-author Daniel Ricklin, PhD, research assistant professor of Pathology and Laboratory Medicine, adds, “Technical challenges make it almost impossible to perform these studies in mice or other small animals in a clinically relevant context, so you have to go to another animal model. I think this new monkey model that we established is a very important step in evaluating disease mechanisms and novel routes of inhibition for this indication.” The Cp40 treatment can be even more cost-effective because, as Ricklin notes, “You may select patients who would benefit most from the treatment, depending on their underlying condition, or have to use filters with lower biocompatibility. Physicians would then have the option of a selective add-on treatment, therefore controlling the treatment cost overall.” Says Lambris, “We’re very excited about this, because we feel it’s the first time we have an opportunity to try a complement inhibitor in hemodialysis, and it can be something good for so many hemodialysis patients. I feel they’re a neglected group of people.” The chances for clinical translation of this novel therapeutic approach are promising since AMY-101, a drug that is based on Cp40, is currently under clinical development, notes Lambris.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/12/141212122355.htm  Original web page at Science Daily

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‘Wimpy’ antibody protects against kidney disease in mice

Led by researchers at the University of Cincinnati (UC) and Cincinnati Children’s HospitalMedicalCenter and published online Nov. 2, 2014, in the journal Nature, the study finds that the mouse antibody IgG1, which is made in large quantities and resembles a human antibody known as IgG4, may actually be protective. “Antibodies protect against pathogens, in large part, by clumping them together and by activating other defenses, including a set of serum proteins, known as complement, and cells that have antibody-binding molecules on their surface called Fc receptors,” says Fred Finkelman, MD, Walter A. and George McDonald Foundation Chair of Medicine and professor of medicine and pediatrics at UC. Finkelman is also an immunobiology researcher at Cincinnati Children’s HospitalMedicalCenter. Richard Strait, MD, an assistant professor of pediatrics at UC and an attending physician at Cincinnati Children’s, is the first author of the research published in Nature. “Surprisingly, most of the antibody made by mice is IgG1, which is relatively defective in its ability to clump pathogens, activate complement, and activate cells by binding to their Fc receptors,” says Finkelman, also a physician at the Cincinnati Department of Veterans Affairs (VA) Medical Center. “Humans have a similar type of antibody, called IgG4, which is also relatively defective in these abilities. “Why should you have such a wimpy antibody? It’s the antibody made in the largest amount. Our thought was that in biology, you don’t get anything for free,” says Finkelman. “If an antibody can kill bacteria and viruses very well, it might also cause inflammation that can harm the animal that makes it. So maybe you need some of these wimpy antibodies to protect against that type of self-inflicted damage.” Researchers tested their hypothesis by studying what happens when genetically bred mice that cannot make IgG1 are injected with a foreign protein that would spur a normal mouse’s immune system to produce IgG1. The genetically bred mouse instead produced another antibody known as IgG3, which affected capillaries in the kidneys and ultimately led to renal failure. “The mouse’s kidneys turned yellow because they essentially shut off blood flow and within a few days there was total destruction of the filtering part of the kidney called the glomerulus,” explains Finkelman. However, injecting IgG1 into mice that could not make the antibody prevented them from developing kidney disease, says Finkelman. “These findings support our hypothesis about the reason for making antibodies such as mouse IgG1 and human IgG4,” says Finkelman. “They also demonstrate a new type of kidney disease that can be caused by certain types of antibody, such as mouse IgG3, even without complement or Fc receptors. In addition, our findings suggest that antibodies such as human IgG4 might be useful for treating people who have diseases caused by other types of antibody.” These diseases include myasthenia gravis and blistering skin diseases, says Finkelman.

Myasthenia gravis is a chronic autoimmune neuromuscular disease characterized by varying degrees of weakness of the skeletal (voluntary) muscles of the body. Individuals with the ailment lose the ability to contract their muscles because their body produces an antibody that destroys acetylcholine receptors in muscle. “The nerves in their muscles continue to fire and they release the chemical acetylcholine, but there is not much for the acetylcholine to bind to,” says Finkelman. “These people become very weak and can actually die because they can no longer swallow well or breathe well.” Individuals with blistering skin diseases make antibodies against the molecules that hold skin cells together, says Finkelman. As a result, the skin cells separate from each other, forming blisters. “People can lose a lot of fluid and can get infected very easily,” says Finkelman. “These are very serious diseases and the treatment is not very good.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/11/141102160103.htm  Original webpage at Science Daily

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Stem-cell success poses immunity challenge for diabetes

Researchers must now work out how to protect cell transplants from the immune systems of people with type 1 diabetes. Each year, surgeon Jose Oberholzer frees a few people with type 1 diabetes from daily insulin injections by giving them a transplant of the insulin-secreting β-cells that the disease attacks. But it is a frustrating process. Harvested from a cadaver’s pancreas, the β-cells are in short supply and vary in quality. And the patients must take drugs to suppress their immune response to the foreign cells, which can in turn cause kidney failure. On 9 October, stem-cell researcher Douglas Melton of HarvardUniversity in Cambridge, Massachusetts, and his colleagues reported an advance that has the potential to overcome Oberholzer’s frustrations and allow many more people with type 1 diabetes to receive transplants. Melton and his team have achieved a long-term goal of stem-cell science: they have created mature β-cells using human stem cells that can be grown from a potentially unlimited supply, and that behave like the real thing (F. W. Pagliuca et al. Cell 159, 428–439; 2014). The next challenge is to work out how to shield these β-cells from the body’s immune response. Researchers had previously created immature β-cells from stem cells and transplanted them into diabetic mice. But they take months to mature into insulin-secreting cells, and it is unclear whether they would do so in humans. The β-cells reported by Melton’s team were grown from adult cells that had been reprogrammed to resemble stem cells. In response to glucose, the β-cells quickly secreted insulin, which the body uses to regulate blood sugar. When implanted in diabetic mice, the cells relieved symptoms within two weeks. The β-cells even formed clusters that are similar to those found in a pancreatic structure called the islet of Langerhans. “If you took these cells and showed them to somebody without telling them what they are, I guarantee you an expert would say that is a perfect human islet cell,” says Oberholzer, who is working with Melton’s team to test the cells in non-human primates.

A remaining hurdle is shielding the cells from immune attack. This is necessary if the treatment is to become more widely available, because immunosuppressant drugs can be justified only in the most severe cases of diabetes. And although mature β-cells could be derived from a patient’s own skin cells, type 1 diabetes is an autoimmune disease, so transplanted cells would still be vulnerable to attack.

http://www.nature.com/news/index.html  Nature

http://www.nature.com/news/stem-cell-success-poses-immunity-challenge-for-diabetes-1.16141  Original web page at Nature

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Immune system of newborn babies stronger than previously thought

Contrary to what was previously thought, newborn immune T cells may have the ability to trigger an inflammatory response to bacteria, according to a new study led by King’s College London. Although their immune system works very differently to that of adults, babies may still be able to mount a strong immune defense, finds the study published in the journal Nature Medicine. Our immune system is made up of several different types of immune cells, including neutrophils which play an important role in the frontline defense against infection, and lymphocytes: B cells which produce antibodies, and T cells that target cells infected with viruses and microbes. Up to now, it was generally believed that babies have an immature immune system that doesn’t trigger the same inflammatory response normally seen in adults. Although babies need to protect themselves from the harmful pathogens they are exposed to from birth, it was thought that their T cells were suppressed to some extent to prevent inflammatory damage to the developing child. Sceptical of this notion, the King’s-led study set out to characterize the properties of T cells, examining very small samples of blood in twenty-eight highly premature babies, as they developed over the first few weeks of life. The team discovered that whilst T cells in newborn babies are largely different to those in adults, it is not because they are immunosuppressed; rather, they manufacture a potent anti-bacterial molecule known as IL8 that has not previously been considered a major product of T cells, and that activates neutrophils to attack the body’s foreign invaders. Dr Deena Gibbons, lead author in the Department of Immunobiology at King’s College London, says: “We found that babies have an in-built anti-bacterial defense mechanism that works differently to adults, but nevertheless may be effective in protecting them. This may also be a mechanism by which the baby protects itself in the womb from infections of the mother. The next stage of our work will be to better understand the pathways that result in the immune cells of newborns being so different to those in adults.” This T cell activity could become a target for future treatments aimed at boosting the immune system of neonates in intensive care, where infection is a major risk for morbidity and mortality. Premature babies are also at serious risk of developing inflammatory diseases such as necrotising enterocolitis (NEC), where severe inflammation destroys tissues in the gut. NEC is the most common gastrointestinal surgical emergency in preterm babies, with mortality rates of around 15 to 30 per cent in the UK.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/09/140921145104.htm  Original web page at Science Daily

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Unusual immune cell needed to prevent oral Candidiasis, researchers find

Oral thrush is caused by an overgrowth of a normally present fungus called Candida albicans, which leads to painful white lesions in the mouth, said senior investigator Sarah L. Gaffen, Ph.D., professor, Division of Rheumatology and Clinical Immunology, Pitt School of Medicine. The infection is treatable, but is a common complication for people with HIV, transplant recipients who take drugs to suppress the immune system, chemotherapy patients and babies with immature immune systems. “In previous work, we found the cytokine interleukin-17 (IL-17), a protein involved in immune regulation, must be present to prevent the development of thrush,” Dr. Gaffen said. “But until now, we didn’t know where the IL-17 was coming from.” Typically, IL-17 is produced by immune T-cells that learn to recognize and remove a foreign organism after an initial exposure, known as adaptive immunity. But unlike humans, mice do not normally acquire Candida during birth and are considered immunologically naïve to it. When the researchers exposed the lab animals to Candida, their IL-17 levels rose within 24 hours despite the lack of a T-cell response. This suggested the immune activity was innate, rather than acquired. To find the cell responsible for IL-17 secretion, lead investigator Heather R. Conti, Ph.D., devised a way of applying a scientific technique called flow cytometry to sort for the first time cells gathered from the oral tissues. In the tongue, she identified unusual ones known as natural TH17 cells that looked very much like T-cells but didn’t behave like them. Subsequent tests showed that the novel cells did, indeed, make IL-17 when exposed to Candida. “These cells are part of a natural host defense system that is present at birth and does not require a first exposure to be activated,” Dr. Gaffen explained. “This study demonstrates for the first time that natural TH17 cells protect against infection.” The researchers speculate that the similarities natural TH17 cells share with T-cells make them vulnerable to HIV, chemotherapy and other agents as well, which could explain why certain people are more susceptible to oral thrush. Also, new drugs that block IL-17 soon will be on the market for treatment of rheumatologic conditions, so it’s possible that thrush could be a side effect. The team plans to examine the factors that influence thrush development within the high-risk groups.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/09/140908121504.htm  Original web page at Science Daily

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* Piglet health: A better understanding of the immune response to intestinal parasites

Parasitologists from the University of Veterinary Medicine of Vienna are closer to understanding the disease process behind porcine neonatal coccidiosis. The disease affects piglets during the first days of their life and can cause heavy diarrhea in the animals. The parasite Cystoisospora suis damages the intestinal mucosa to such a degree that it threatens the growth and survival of the pigs. The researchers have now analysed the immune response to the infection. The results were published in the journal Parasite Immunology. Porcine neonatal coccidiosis is a serious parasitic infection of young piglets that severely damages the intestinal mucosa, leading to diarrhea and reduced nutritional intake. As the infection reduces animal growth, and because secondary infections can result in increased mortality, the disease is responsible for substantial economic losses at affected pig farms. “The developing immune system of neonatal piglets is not yet mature enough to deal with the parasites. For this reason, an infection shortly after birth results in weakened intestinal tissue with appropriate consequences. By comparison, Cystoisospora suisis absolutely harmless for adult pigs and their mature immune systems,” explains first author Simone Gabner. Immune cells grow more quickly in the intestines of infected piglets than in healthy ones. Scientists from the Institute of Parasitology at the Vetmeduni Vienna investigated how the developing immune system of piglets responds to an infection with Cystoisospora suis. For the purpose of the study, 25 animals aged three days were infected and observed in comparison with another 26 healthy, non-infected animals. The researchers analysed various different immune cells in the intestines of both groups over the course of the first days of life. High levels of so-called gamma delta T cells, a type of cell that recognizes tissue damage and activates the immune system, were found in infected piglets as early as four days after infection. Cytotoxic T-cells were detected eleven days after an infection. These are responsible for the cell death of infected cells and appear to have an immunologic memory function with regard to porcine neonatal coccidiosis. Both types of T cells were detected significantly earlier in infected piglets than in non-infected animals. In healthy piglets, the T cells begin to settle in the intestine from about the third week of life. “Before this, we didn’t know which T cells played a part in porcine neonatal coccidiosis. Now we also know at which point they appear in the course and development of the disease. Their exact role in the intestines of the animals, however, remains unclear,” Gabner says. “Cystoisospora suis affects epithelial cells in the intestine and destroys the natural barrier against pathogens. This makes secondary infections likely. We still don’t know whether the T cells reduce the overall damage to the intestinal mucosa or if they perhaps cause the damage to the intestinal cells.” Gabner and her colleagues also researched various receptors of the innate immune system in the piglets as well as signalling substances which play a part in the inflammatory response. Just four days after infection, the researchers found increased expression of certain pathogen receptors (TLR-2 and NOD2) and signalling molecules involved in inflammatory reactions (TNF-α) in the intestine of the infected animals. The parasite thus triggers the activation of the immune system. “Our research shows which signalling pathways could be involved. The immune response possibly begins even earlier. This is something to be investigated in future studies. We are one step closer to better understanding the disease,” says Gabner. Previous studies by the research group showed that protective antibodies against porcine neonatal coccidiosis are transferred to the piglets through the sow’s milk directly after birth. Sows that had been exposed to the pathogen produced the respective antibodies from which the piglets could then benefit. In a follow-up study, the researchers went one step further. They deliberately infected sows with the parasites during gestation in order to increase the antibody levels in the maternal animals. The aim was to supply the piglets with as many antibodies from the mother’s milk during their first days of life as possible. This “milk vaccination” was a success. The piglets of infected sows exhibited a less severe development of the disease than piglets of non-infected sows. The more antibodies a sow transferred to its piglets, the weaker the symptoms exhibited by the piglets.

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/09/140912085310.htm  Original web page at Science Daily

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How stem cells can be used to treat lung disease

Previous studies have shown that stem cells can reduce lung inflammation and restore some function in ARDS, but experts are not sure how this occurs. The new study, which was presented at the European Respiratory Society’s International Congress, brings us a step closer to understanding the mechanisms that occur within an injured lung. ARDS is a life-threatening condition in which the efficiency of the lungs is severely reduced. It is caused by damage to the capillary wall either from illness or a physical injury, such as major trauma. ARDS is characterised by excessive and dysregulated inflammation in the lung and patients require mechanical ventilation in order to breathe. Although inflammation is usually a method by which the body heals and copes with an infection, when the inflammation is dysregulated it can lead to severe damage. Immune cells known as macrophages can coordinate the inflammatory response by driving or suppressing inflammation, depending on the stimulation. The researchers investigated whether stem cells can affect the stimulation of the macrophages and promote the state in which they will suppress the inflammation. They tested this in an animal model using human bone marrow-derived stem cells. Mice were infected with live bacteria to induce acute pneumonia and model the condition of ARDS. The results showed that treatment with stem cells led to significant reductions in lung injury, inflammation and improved bacterial clearance. Importantly, when stem cells were given to animals that had their macrophages artificially removed, the protective effect was gone. This suggests that the macrophages are an important part of the beneficial effects of stem cells seen in this model of ARDS. These results were further supported by experiments where stem cells were applied to human macrophages in samples of fluid taken from lungs of patients with ARDS. Again, the stem cells were able to promote the anti-inflammatory state in the human macrophage cells. The authors have identified several proteins, secreted by the stem cells, that would be responsible for this effect. Dr Anna Krasnodembskaya, lead author of the study from the Queens University Belfast, said: “This is the first study to our knowledge that has looked at how stem cells can change the functional properties of the macrophages in both humans and a mouse model. The findings highlight the advantages of stem cell treatment, as they can actively respond to the local micro-environment and exert multiple beneficial effects. We believe that clinical trials are now needed to test whether this can be an effective treatment for people suffering from ARDS.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/09/140909093711.htm  Original web page at Science Daily

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Blood transfusion called priority Ebola therapy

Treating Ebola patients with blood or purified serum of disease survivors should be a priority in the fight against the outbreak in West Africa, an expert panel organized by the World Health Organization (WHO) said on 5 September. The recommendation came at the end of a two-day meeting to determine which experimental Ebola therapies and vaccines should be prioritised for accelerated clinical development. The WHO estimates that roughly 3,700 people have been infected in West Africa, and about 1,850 have died. Marie-Paule Kieny, WHO assistant director-general for health systems and innovation, told reporters that the transfusion of whole blood or purified serum from Ebola survivors was the therapy with the greatest potential to be implemented immediately on a large scale in West Africa — in part because the outbreak’s size means there are many potential donors available. The idea is to transfer antibodies against Ebola from survivors to sufferers, but there is little information on the efficacy of such transfusions. The priority, said Kieny, will be to ensure that collected blood is free of other pathogens and that health-care workers remain safe during transfusions, when they are exposed to Ebola patients’ blood. Efforts to institute proper infrastructure and training are in place are already beginning, she added. No Ebola therapies or vaccines have been approved for human use, but a WHO expert panel said on 11 August that testing and using experimental drugs and vaccines in the outbreak is ethically acceptable provided that every effort is made to gather scientific data on safety and efficacy. That panel said that such actions are justified because of the exceptional nature of this outbreak; for example, it has proven difficult to implement public health measures that have ended past Ebola outbreaks. At the WHO meeting that concluded today, experts also recommended prioritising tests of two candidate vaccines: a chimpanzee adenovirus vaccine (ChAd3) developed by the US National Institute of Allergy and Infectious Diseases (NIAID) and Glaxo SmithKline, and a recombinant vesicular stomatitis virus (rVSV) vaccine developed by the Public Health Agency of Canada and licensed to NewLink Genetics and Profectus Biosciences. Phase I trials of ChAd3 will start this month in the United States, the United Kingdom, Gambia and Mali. The first tests will be on healthy volunteers because areas stricken by Ebola lack infrastructure to do proper trials.

Both the ChAd3 and rVSV vaccines have conferred 100% protection against Ebola in animal studies. The WHO estimates that 800 doses of rVSV are currently available, and some 15,000 doses of ChAd3 should be ready by the end of the year. The WHO has also selected drugs for priority use and testing, basing its decision on those that have shown good efficacy and safety in non-human primates. The chosen treatments include ZMapp, a cocktail of monoclonal antibodies which last week was shown to confer 100% protection in rhesus macaques. On 2 September, the US Department of Health and Human Services announced up to US$42.3 million in funding over 18 months for the drug’s development and manufacturing. Oyewale Tomori, a virologist at Redeemer’s University in Redemption City, Nigeria, says that efforts to test and distribute new therapies and vaccines must not detract from the need to institute basic public health measures in Ebola-stricken areas or to provide supportive care for patients. Few patients in outbreak areas have access to quality care, such as intravenous rehydration, that can greatly reduce mortality. But WHO said on 28 August that it was seeking $490 million to bolster basic public health measures and quality of care in Ebola treatment centres.

Nature doi:10.1038/nature.2014.15854

http://www.nature.com/news/index.html Nature

http://www.nature.com/news/blood-transfusion-called-priority-ebola-therapy-1.15854 Original web page at Nature

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* Researchers learn how to rejuvenate aging immune cells

Researchers from UCL (University College London) have demonstrated how an interplay between nutrition, metabolism and immunity is involved in the process of aging. The two new studies, supported by the Biotechnology and Biological Sciences Research Council (BBSRC), could help to enhance our immunity to disease through dietary intervention and help make existing immune system therapies more effective. As we age our immune systems decline. Older people suffer from increased incidence and severity of both infections and cancer. In addition, vaccination becomes less efficient with age. In previous BBSRC funded work, Professor Arne Akbar’s group at UCL showed that aging in immune system cells known as ‘T lymphocytes’ was controlled by a molecule called ‘p38 MAPK’ that acts as a brake to prevent certain cellular functions. They found that this braking action could be reversed by using a p38 MAPK inhibitor, suggesting the possibility of rejuvenating old T cells using drug treatment. In a new study published in Nature Immunology the group shows that p38 MAPK is activated by low nutrient levels, coupled with signals associated with age, or senescence, within the cell. It has been suspected for a long time that nutrition, metabolism and immunity are linked and this paper provides a prototype mechanism of how nutrient and senescence signals converge to regulate the function of T lymphocytes. The study also suggests that the function of old T lymphocytes could be reconstituted by blocking one of several molecules involved in the process. The research was conducted at UCL alongside colleagues from Complejo Hospitalario de Navarra, Pamplona, Spain. The second paper, published in The Journal of Clinical Investigation, showed that blocking p38 MAPK boosted the fitness of cells that had shown signs of aging; improving the function of mitochondria (the cellular batteries) and enhancing their ability to divide. Extra energy for the cell to divide was generated by the recycling of intracellular molecules, a process known as autophagy. This highlights the existence of a common signaling pathway in old/senescent T lymphocytes that controls their immune function as well as metabolism, further underscoring the intimate association between aging and metabolism of T lymphocytes. This study was conducted by researchers from UCL, Cancer Research UK, University of Oxford and University of Tor Vergata, Rome, Italy.

Professor Arne Akbar said: “Our life expectancy at birth is now twice as long as it was 150 years ago and our lifespans are on the increase. Healthcare costs associated with aging are immense and there will be an increasing number of older people in our population who will have a lower quality of life due in part to immune decline. It is therefore essential to understand reasons why immunity decreases and whether it is possible to counteract some of these changes. “An important question is whether this knowledge can be used to enhance immunity during aging. Many drug companies have already developed p38 inhibitors in attempts to treat inflammatory diseases. One new possibility for their use is that these compounds could be used to enhance immunity in older subjects. Another possibility is that dietary instead of drug intervention could be used to enhance immunity since metabolism and senescence are two sides of the same coin.”

http://www.sciencedaily.com/  Science Daily

http://www.sciencedaily.com/releases/2014/08/140824152345.htm  Original we page at Science Daily

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Molecule regulates production of antibacterial agent used by immune cells

NFATc3 is one of several related protein molecules known to play a role in regulating genes in the T and B cells of the immune system. Ravi Ranjan, research scientist at the University of Illinois at Chicago College of Medicine, who is first author on the paper, said he and his collaborators wanted to know if NFATc3 also had any function in macrophages — specialized killer cells that hunt down, engulf and destroy marauding bacteria. Macrophages kill using chemicals, including nitric oxide, that they synthesize in response to infection. Macrophages are also important in reducing the inflammation in sepsis, an out-of-control reaction to infection that can cause organ failure and death. When the researchers exposed macrophages to chemicals that signal a bacterial infection, they found that NFATc3 increasingly bound to genes that boost the production of nitric oxide synthase — the enzyme that makes nitric oxide. The binding of NFATc3 suggests the molecule is turning on those genes and upping the production of nitric oxide. Macrophages deficient in NFATc3 produced much less nitric oxide synthase under the same conditions. “Without the ability to synthesize inducible nitric oxide synthase, a macrophage would be missing a key element of its chemical weaponry,” Ranjan said. “We would expect these cells to be much less effective at killing bacteria and attenuating sepsis.” To test this hypothesis, the researchers then induced sepsis in mice that lacked the ability to make NFATc3. As expected, lung tissue from these mice had a much higher bacterial load than the lung tissue of septic mice that could produce NFATc3. “Our study demonstrates that NFATc3 is required for macrophages to effectively fight infection, because without it, they can’t make their primary bactericidal agent — nitric oxide,” Ranjan said. The immune system must strike a balance between fighting infection and going overboard as it does in sepsis and actually causing harm, Ranjan said. “An overproduction of nitric oxide can actually contribute to lung injury even as it helps clear bacterial infections,” he said. “An NFATc3 inhibitor, given as a drug to people in septic shock, may be a way to attenuate the harmful effects that come with an overproduction of nitric oxide.”

The study was published in the Journal of Innate Immunity.

http://www.sciencedaily.com/  Science Daily

July 22, 2014

http://www.sciencedaily.com/releases/2014/06/140620143920.htm Original web page at Science Daily

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Newborns exposed to dirt, dander, germs may have lower allergy, asthma risk

Infants exposed to rodent and pet dander, roach allergens and a wide variety of household bacteria in the first year of life appear less likely to suffer from allergies, wheezing and asthma, according to results of a study conducted by scientists at the Johns Hopkins Children’s Center and other institutions. Previous research has shown that children who grow up on farms have lower allergy and asthma rates, a phenomenon attributed to their regular exposure to microorganisms present in farm soil. Other studies, however, have found increased asthma risk among inner-city dwellers exposed to high levels of roach and mouse allergens and pollutants. The new study confirms that children who live in such homes do have higher overall allergy and asthma rates but adds a surprising twist: Those who encounter such substances before their first birthdays seem to benefit rather than suffer from them. Importantly, the protective effects of both allergen and bacterial exposure were not seen if a child’s first encounter with these substances occurred after age 1, the research found. A report on the study, published on June 6 in the Journal of Allergy and Clinical Immunology, reveals that early exposure to bacteria and certain allergens may have a protective effect by shaping children’s immune responses — a finding that researchers say may help inform preventive strategies for allergies and wheezing, both precursors to asthma. “Our study shows that the timing of initial exposure may be critical,” says study author Robert Wood, M.D., chief of the Division of Allergy and Immunology at the Johns Hopkins Children’s Center. “What this tells us is that not only are many of our immune responses shaped in the first year of life, but also that certain bacteria and allergens play an important role in stimulating and training the immune system to behave a certain way.” The study was conducted among 467 inner-city newborns from Baltimore, Boston, New York and St.   Louis whose health was tracked over three years. The investigators visited homes to measure the levels and types of allergens present in the infants’ surroundings and tested them for allergies and wheezing via periodic blood and skin-prick tests, physical exams and parental surveys. In addition, the researchers collected and analyzed the bacterial content of dust collected from the homes of 104 of the 467 infants in the study.

Infants who grew up in homes with mouse and cat dander and cockroach droppings in the first year of life had lower rates of wheezing at age 3, compared with children not exposed to these allergens soon after birth. The protective effect, moreover, was additive, the researchers found, with infants exposed to all three allergens having lower risk than those exposed to one, two or none of the allergens. Specifically, wheezing was three times as common among children who grew up without exposure to such allergens (51 percent), compared with children who spent their first year of life in houses where all three allergens were present (17 percent). In addition, infants in homes with a greater variety of bacteria were less likely to develop environmental allergies and wheezing at age 3. When researchers studied the effects of cumulative exposure to both bacteria and mouse, cockroach and cat allergens, they noticed another striking difference. Children free of wheezing and allergies at age 3 had grown up with the highest levels of household allergens and were the most likely to live in houses with the richest array of bacterial species. Some 41 percent of allergy-free and wheeze-free children had grown up in such allergen and bacteria-rich homes. By contrast, only 8 percent of children who suffered from both allergy and wheezing had been exposed to these substances in their first year of life. Asthma is one of the most common pediatric illnesses, affecting some 7 million children in the United States, according to the U.S. Centers for Disease Control and Prevention. By the time they turn 3, up to half of all children develop wheezing, which in many cases evolves into full-blown asthma.

http://www.sciencedaily.com/  Science Daily

July 8, 2014

http://www.sciencedaily.com/releases/2014/06/140606091157.htm  Original web page at Science Daily

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Cancer immunotherapy: Potential new target found

“We’ve known about these cells blocking immune response for a decade, but haven’t been able to shut them down for lack of an identified target,” said the paper’s senior author, Larry Kwak, M.D., Ph.D., chair of Lymphoma/Myeloma and director of the Center for Cancer Immunology Research at The University of Texas MD Anderson Cancer Center. The cells, called myeloid-derived suppressor cells (MDSCs), are found abundantly in the microenvironment around tumors. Created with other blood cells in the bone marrow, they interfere with activation and proliferation of T cells, the immune system’s attack cells. MDSCs have been shown in mouse models to accelerate cancer progression and metastasis. “This is the first demonstration of a molecule on these cells that allows us to make an antibody, in this case a peptide, to bind to them and get rid of them,” Kwak said. “It’s a brand new immunotherapy target.” Kwak has developed anti-cancer therapeutic vaccines to spark an immune system attack against tumors, but their effectiveness has been hindered by factors such as MDSCs that stifle immune response. “The key to taking cancer vaccines to another level is combining them with immunotherapies that target the tumor microenvironment,” Kwak said. Antibodies only bind to target cells Peptide antibodies developed by Kwak and co-discoverer, Hong Qin, Ph.D., assistant professor of Lymphoma/Myeloma, wipe out MDSCs in the blood, spleen and tumor cells of mice without binding to other white blood cells or dendritic cells involved in immune response. “That’s really exciting because it’s so specific for MDSCs that we would expect few, if any, side effects,” Kwak said. The team is working to develop the same target for use in humans. With no candidate targets, the team took an objective approach by applying a peptide phage library to MDSCs, which permitted mass screening for candidate peptides — short sequences of amino acids — that bind to the surface of the MDSCs.

Peptide phage gathered from the MDSCs were expanded, enriched and then sequenced to identify predominant peptides. The team found two, labeled G3 and H6, that bound only to MDSCs; other candidates were eliminated because they also tied in to other types of cell. They fused the two peptides to a portion of mouse immune globulin to generate experimental “peptibodies.” Both peptibodies bound to both types of MDSC — monocytic white blood cells, which engulf large foreign bodies or cell debris, and granulocytic white cells loaded with tiny granules. The researchers treated mice with two types of thymus tumor with each peptibody, a control peptibody and an antibody against Gr-1. The G3 and H6 peptibodies depleted both types of MDSC in the blood and spleens of mice in both tumor models, while the Gr-1 antibody only worked against granulocytic MDSC. Both peptibodies also wiped out the MDSCs in both types of thymic tumor and in the blood and spleen of mice with lymphoma. Shrinking tumors, identifying alarmins To see whether MDSC depletion would impede tumor growth, they treated mice with thymic tumors with the peptides every other day for two weeks. Mice treated with either pep-G3 or pep-H6 had tumors that were about half the size and weight of those in mice treated with controls or the Gr-1 antibody. Analysis of surface proteins on the MDSCs identified S100A9 and S100A8 as the likely binding targets for the two peptibodies. They’re members of the S100 family of proteins, called alarmins, which are released outside the cell as a danger signal in response to inflammation. MDSCs’ mechanisms for blocking immune response are not well-characterized because they’ve been hard to study for lack of a targeting method, Kwak said. Kwak and colleagues are working to extend their findings to human MDSCs.

http://www.sciencedaily.com/  Science Daily

June 24, 2014

http://www.sciencedaily.com/releases/2014/05/140525154726.htm  Original web page at Science Daily

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Breakthrough in controlling T cell activation

A team of UniformedServicesUniversity of the Health Sciences (USU) researchers led by Dr. Brian Schaefer, Associate Professor in USU’s Department of Microbiology and Immunology, has demonstrated that the “POLKADOTS signalosome” (named for its dot-like appearance in cells) activates a protein called “NF-kappaB” in T cells. A signalosome is a cluster of proteins that works together inside a cell to control the activity of other proteins. NF-kappaB is a protein that turns on many different T cell functions, including those that contribute to autoimmunity and rejection of transplants. Dr. Schaefer’s team, including lead author, Dr. Suman Paul, had previously shown that the POLKADOTS signalosome, in addition to activating this protein, also limits how much NF-kappaB is turned on. Because the POLKADOTS signalosome is a major point of control for NF-kappaB activation, it may be an attractive target for the design of new drugs to block or regulate T cell functions. Normally, T cells play a key role in maintaining health, by helping to eliminate invading disease-causing bacteria and viruses. However, in some individuals, T cells begin to react against tissues in the body, causing autoimmunity. Also, when a patient receives an organ transplant, T cells will react to that organ and cause transplant rejection, if T cell functions are not successfully blocked. There are currently only a small number of drugs available to treat autoimmunity and transplant rejection, and these drugs do not work for all patients. Inhibiting NF-kappaB activation has long been recognized as a potentially useful strategy for blocking the T cell responses that cause autoimmunity and transplant rejection. However, because NF-kappaB is necessary for a wide variety of important processes throughout the body, directly targeting this protein would lead to many undesired and harmful side effects. Importantly, Dr. Schaefer’s group predicts that drugs that block the activity of the POLKADOTS signalosome would inhibit NF-kappaB only in T cells. This is because the POLKADOTS signalosome appears to be present only in T cells. If successfully produced, drugs that act on the POLKADOTS signalosome may be a powerful new therapy for the treatment of many different autoimmune diseases and transplant rejection.

http://www.sciencedaily.com/  Science Daily

June 10, 2014

http://www.sciencedaily.com/releases/2014/05/140513091117.htm  Original web page at Science Daily

 

 

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How immune cells use steroids

If you’ve ever used a steroid, for example cortisone cream on eczema, you’ll have seen first-hand how efficient steroids are at suppressing the immune response. Normally, when your body senses that immune cells have finished their job, it produces steroids -but which cells actually do that? In this latest study, scientists looked at Th2 immune cells during parasitic infection and saw that at a certain point, these cells produce a steroid called pregnenolone. “We were really surprised to see that these immune cells are producing a steroid. In cell culture, we see that the steroids play a part in regulating T cell proliferation,” says Bidesh Mahata in the Teichmann group at EMBL-EBI and Sanger, who designed the study. “We had already seen that T-helper cells were producing steroids, but initially we were blind — what was going on?” “Because we had access to data from single-cell sequencing experiments, we could conduct deep statistical analyses on a very large and comprehensive dataset,” explains Sarah. “That pointed us to the genes involved in pregnenolone production at the point when Th2 cells are being produced, and we could deduce that the Th2 cells themselves were involved in immunosuppression.” The researchers suggest that bringing the immune system back into balance is an intrinsic part of this particular immune response. “We confirmed our findings experimentally, showing that pregnenolone inhibits both Th cell proliferation and B cell immunoglobulin class switching,” adds Bidesh. “We think this points to the idea that Th2 cells differentiate into steroid-producing cells as part of a larger mechanism to bring the immune system back into balance.” The findings from this study are strengthened by those of the Gelfand group at National Jewish Health in Denver, US. The next step for the Genome Campus group is to figure out how the process starts, what other tissues are involved and which types of infection give rise to this response.

http://www.sciencedaily.com/  Science Daily

June 10, 2014

http://www.sciencedaily.com/releases/2014/05/140508133037.htm  Original web page at Science Daily

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Living organ regenerated for first time: Thymus rebuilt in mice

A team of scientists at the University of Edinburgh has succeeded in regenerating a living organ for the first time. The team rebuilt the thymus — an organ in the body located next to the heart that produces important immune cells. The advance could pave the way for new therapies for people with damaged immune systems and genetic conditions that affect thymus development. The team reactivated a natural mechanism that shuts down with age to rejuvenate the thymus in very old mice. After treatment, the regenerated organ had a similar structure to that found in a young mouse. The function of the thymus was also restored and the mice began making more white blood cells called T cells, which are important for fighting off infection. However, it is not yet clear whether the immune system of the mice was improved. The study was led by researchers from the Medical Research Council Centre for Regenerative Medicine at the University of Edinburgh. The researchers targeted a protein produced by cells of the thymus — called FOXN1 — which helps to control how important genes are switched on. By increasing levels of FOXN1, the team instructed stem cell-like cells to rebuild the organ. “Our results suggest that targeting the same pathway in humans may improve thymus function and therefore boost immunity in elderly patients, or those with a suppressed immune system. However, before we test this in humans we need to carry out more work to make sure the process can be tightly controlled,” said Clare Blackburn, Professor of Tissue Stem Cell Biology, MRC Centre for Regenerative Medicine.

The thymus deteriorates with age, which is why older people are often more susceptible to infections such as flu. The discovery could also offer hope to patients with DiGeorge syndrome, a genetic condition that causes the thymus to not develop properly. “One of the key goals in regenerative medicine is harnessing the body’s own repair mechanisms and manipulating these in a controlled way to treat disease. This interesting study suggests that organ regeneration in a mammal can be directed by manipulation of a single protein, which is likely to have broad implications for other areas of regenerative biology,” said Dr Rob Buckle, Head of Regenerative Medicine, Medical Research Council. The study is published in the journal Development.

http://www.sciencedaily.com/  Science Daily

April 29, 2014

http://www.sciencedaily.com/releases/2014/04/140408115610.htm  Original web page at Science Daily

 

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Immunology: A tolerant approach

Despite a long record of failure, a few immunologists continue to pursue precisely targeted therapies for autoimmune diseases. Ever since Ed Wiley learned that he had type 1 diabetes in 1997, he has fretted over his meals, blood glucose levels and the daily programming of his insulin pump. Wiley, a statistician who lives outside Boulder, Colorado, and works on big data analytics, has learned to live in a state of hypervigilance. Finding the right dose of insulin turned out to be more art than science and, like many with the disease, his control began slipping away with time. By 2008, he says, “my insulin doses just basically didn’t work any more”. Unable to reliably anticipate what he needed, Wiley was having severe hypoglycaemic episodes and was at risk of diabetic seizures and long-term disability. On his endocrinologist’s advice, he enrolled in a clinical trial of a novel drug called BHT-3021. Although technically a vaccine, BHT-3021 is not designed to stimulate an immune response, but rather to shut it down, stopping the body’s errant attack against cells in the pancreas that produce insulin. The goal is to achieve immune tolerance. Drugs that broadly suppress immunity are the standard treatment for autoimmune disorders such as multiple sclerosis (MS), rheumatoid arthritis and lupus. But these drugs can lead to life-threatening infections, and do not address the cause of the disease. Tolerance therapies are different. They aim to target only the immune cells that react to a specific antigen, a substance — in Wiley’s case, the insulin precursor proinsulin — that might trigger a response. “Why shut down a major arm of the immune system, if we’re just trying to restore tolerance to one antigen?” asks immunologist Larry Steinman of StanfordUniversity in California, who developed BHT-3021. This strategy, known as antigen-specific tolerance, is simple in concept. But, so far, dozens of clinical trials have failed to achieve a categorical success. And there is a fine line between calming the immune system and stimulating it, so these efforts risk making a disease worse — as happened in an MS trial some 15 years ago.

BHT-3021 is one of a new wave of treatments conceived by five veterans of the field that promises to do better. Early-stage trials show encouraging results in people with MS and type 1 diabetes. “A number of these approaches really are going to work,” predicts David Wraith, an immunologist at the University of Bristol, UK, and one of the few persisting in pursuing the work. “The science has caught up.” The approaches are varied, but they all rely on the body’s natural ability to distinguish its own substances from those of foreign intruders. When bacteria or viruses invade, some are swallowed by specialized antigen-presenting cells, or APCs. These chop up the bacterial or viral antigens and present them to T cells, white blood cells that orchestrate the immune response. The T cells then proliferate and launch a coordinated attack. APCs also ensure that normal daily maintenance does not turn deadly. As the body’s own cells continuously die and are replenished, APCs mop up the debris and present those self-antigens to T cells along with an array of proteins that signal that these cellular remnants pose no danger. In autoimmunity, for unknown reasons, this protective mechanism goes awry. The new therapies are designed to override this dysfunction by deliberately sending the relevant antigen to tissues where the body is likely to see it as a non-threatening part of itself. Most of the therapies developed so far target MS, which occurs when the immune system attacks the myelin sheath that protects neurons in the brain and spinal cord. Immunologist Stephen Miller of NorthwesternUniversity in Chicago, Illinois, designed a therapy that he and neurologist Roland Martin, now at University Hospital Zurich in Switzerland, began testing in patients in 2009. During the treatment, the patients’ white blood cells are extracted, chemically linked to seven myelin antigens, then reinfused. The cells make their way to the spleen, where they die and release the antigen, which is picked up by APCs.

Read more: http://www.nature.com/news/immunology-a-tolerant-approach-1.14933

http://www.nature.com/news/index.html Nature

April 15, 2014

http://www.nature.com/news/immunology-a-tolerant-approach-1.14933  Original web page at Nature

 

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Immune cells need each other to combat deadly lung-invading fungus

Although long recognized as an essential defense against the lung-invading fungus Aspergillus fumigatus, Neutrophils actually require a little help from fellow immune cells, according to a study by Amariliz Rivera, her colleagues at Rutgers New Jersey Medical School and scientists at the Fred Hutchinson Cancer Research Center in Seattle. The study recently appeared in the journal PLOS Pathogens. The environmental fungus Aspergillus fumigatus floats harmlessly in the air, posing no threat to healthy humans. But it’s a different story for transplantation patients and others with compromised immune systems, such as patients with leukemia, where inhalation of Aspergillus spores can lead to invasive and life-threatening disease. The body’s primary defense against this fungus is provided by immune cells called neutrophils, which race to the lungs and quickly engulf and kill invading spores. But these cells don’t act alone, according to Rivera’s new work. In fact, their fungus-killing prowess depends on another type of immune cell called inflammatory monocytes. Without the help of these monocytes, neutrophils still ingested spores in the lungs of mice, but their ability to deliver the final death blow was impaired. Indeed, mice lacking inflammatory monocytes were just as susceptible to deadly Aspergillus infection as those lacking neutrophils. Rivera suggests that although neutrophils alone may contain the fungus initially (these cells are the first on the scene), they need help from inflammatory monocytes for sustained control of infection. If these results hold true in humans, approaches designed to boost the function of inflammatory monocytes may help to ward off deadly infections in clinical settings.

http://www.sciencedaily.com/  Science Daily

April 1, 2014

http://www.sciencedaily.com/releases/2014/03/140313122540.htm  Original web page at Science Daily

 

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It slices, it dices, and it protects the body from harm

The discovery of the structure of this enzyme, a first-responder in the body’s “innate immune system,” could enable new strategies for fighting infectious agents and possibly prostate cancer and obesity. The work was published Feb. 27 in the journal Science. Until now, the research community has lacked a structural model of the human form of this enzyme, known as RNase L, said Alexei Korennykh, an assistant professor of molecular biology and leader of the team that made the discovery. “Now that we have the human RNase L structure, we can begin to understand the effects of carcinogenic mutations in the RNase L gene. For example, families with hereditary prostate cancers often carry genetic mutations in the region, or locus, encoding RNase L,” Korennykh said. The connection is so strong that the RNase L locus also goes by the name “hereditary prostate cancer.” The newly found structure reveals the positions of these mutations and explains why some of these mutations could be detrimental, perhaps leading to cancer, Korennykh said. RNase L is also essential for insulin function and has been implicated in obesity. The Princeton team’s work has also led to new insights on the enzyme’s function. The enzyme is an important player in the innate immune system, a rapid and broad response to invaders that includes the production of a molecule called interferon. Interferon relays distress signals from infected cells to neighboring healthy cells, thereby activating RNase L to turn on its ability to slice through RNA, a type of genetic material that is similar to DNA. The result is new cells armed for destruction of the foreign RNA.

The 3D structure uncovered by Korennykh and his team consists of two nearly identical subunits called protomers. The researchers found that one protomer finds and attaches to the RNA, while the other protomer snips it. The initial protomer latches onto one of the four “letters” that make up the RNA code, in particular, the “U,” which stands for a component of RNA called uridine. The other protomer “counts” RNA letters starting from the U, skips exactly one letter, then cuts the RNA. Although the enzyme can slice any RNA, even that of the body’s own cells, it only does so when activated by interferon. “We were surprised to find that the two protomers were identical but have different roles, one binding and one slicing,” Korennykh said. “Enzymes usually have distinct sites that bind the substrate and catalyze reactions. In the case of RNase L, it appears that the same exact protein surface can do both binding and catalysis. One RNase L subunit randomly adopts a binding role, whereas the other identical subunit has no other choice but to do catalysis.” To discover the enzyme’s structure, the researchers first created a crystal of the RNase L enzyme. The main challenge was finding the right combination of chemical treatments that would force the enzyme to crystallize without destroying it.

After much trial and error and with the help of an automated system, postdoctoral research associate Jesse Donovan and graduate student Yuchen Han succeeded in making the crystals. Next, the crystals were bombarded with powerful X-rays, which diffract when they hit the atoms in the crystal and form patterns indicative of the crystal’s structure. The diffraction patterns revealed how the atoms of RNase L are arranged in 3D space. At the same time Sneha Rath, a graduate student in Korennykh’s laboratory, worked on understanding the RNA cleavage mechanism of RNase L using synthetic RNA fragments. Rath’s results matched the structural findings of Han and Donovan, and the two pieces of data ultimately revealed how RNase L cleaves its RNA targets. Han, Donovan and Rath contributed equally to the paper and are listed as co-first authors. Finally, senior research specialist Gena Whitney and graduate student Alisha Chitrakar conducted additional studies of RNase L in human cells, confirming the 3D structure. Now that the human structure has been solved, researchers can explore ways to either enhance or dampen RNase L activity for medical and therapeutic uses, Korennykh said. “This work illustrates the wonderful usefulness of doing both crystallography and careful kinetic and enzymatic studies at the same time,” said Peter Walter, professor of biochemistry and biophysics at the University of California-San Francisco School of Medicine. “Crystallography gives a static picture which becomes vastly enhanced by studies of the kinetics.”

http://www.eurekalert.org/bysubject/medicine.php  Eurek Alert! Medicine

March 18, 2024

http://www.eurekalert.org/pub_releases/2014-02/pu-isi022814.php  Original web page at Eurek Alert! Medicine

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Immune cells regulate blood stem cells, research shows

During an infection, the blood stem cells must complete two tasks: they must first recognize that more blood cells have to be produced and, secondly, they must recognize what kind are required. Immune cells control the blood stem cells in the bone marrow and therefore also the body’s own defenses, new research shows. The findings could lead the way to new forms of therapy, such as for bone marrow diseases like leukemia. Researchers in Bern have discovered that, during a viral infection, immune cells control the blood stem cells in the bone marrow and therefore also the body’s own defenses. The findings could allow for new forms of therapy, such as for bone marrow diseases like leukemia. During a viral infection, the body needs various defense mechanisms — amongst other things, a large number of white blood cells (leukocytes) must be produced in the bone marrow within a short period of time. In the bone marrow, stem cells are responsible for this task: the blood stem cells. In addition to white blood cells, blood stem cells also produce red blood cells and platelets. The blood stem cells are located in specialized niches in the bone marrow and are surrounded by specialized niche cells. During an infection, the blood stem cells must complete two tasks: they must first recognise that more blood cells have to be produced and, secondly, they must recognise what kind of.

Now, for the first time, researchers at the Department of Medical Oncology at the University of Bern and Bern University Hospital headed by Prof. Adrian Ochsenbein have investigated how the blood stem cells in the bone marrow are regulated by the immune system’s so-called T killer cells during a viral infection. As this regulation mechanism mediated by the immune system also plays an important role in other diseases such as leukemia, these findings could lead to novel therapeutic approaches. The study is being published in the peer-reviewed journal “Cell Stem Cell” today. One function of T killer cells is to “patrol” in the blood and remove pathogen-infected cells. However, they also interact with the blood stem cells in the bone marrow. The oncologists in Bern were able to show that messenger substances secreted by the T killer cells modulate the niche cells. In turn, the niche cells control the production and also the differentiation of the blood stem cells. This mechanism is important in order to fight pathogens such as viruses or bacteria. However, various forms of the bone marrow disease leukemia are caused by a malignant transformation of exactly these blood stem cells. This leads to the formation of so-called leukemia stem cells. In both cases, the mechanisms are similar: the “good” mechanism regulates healthy blood stem cells during an infection, whilst the “bad” one leads to the multiplication of leukemia stem cells. This in turn leads to a progression of the leukemia. This similarity has already been investigated in a previous project by the same group of researchers. “We hope that this will enable us to better understand and fight infectious diseases as well as bone marrow diseases such as leukemia,” says Carsten Riether from the Department of Clinical Research at the University of Bern and the Department of Medical Oncology at Bern University Hospital and the University of Bern.

http://www.sciencedaily.com/  Science Daily

March 18, 2014

http://www.sciencedaily.com/releases/2014/02/140221073839.htm  Original web page at Science Daily